# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 1.25e-09 a.60.1.2 100280 2f3nA 76 3.16e-09 a.60.1.2 132885 1b4fA 82 1.49e-08 a.60.1.2 17934 1b0xA 94 2.71e-08 a.60.1.2 17933 1ow5A 85 9.99e-08 a.60.1.2 93630 2e8oA 103 1.05e-06 3bs5B 80 2.48e-05 1oxjA 173 0.002294 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.004767 a.60.1.2 73077 3bs5A 106 0.02238 2d3dA 88 0.03126 3bs7A 78 0.05597 1dxsA 80 0.1396 a.60.1.2 17944 1cokA 68 0.1403 a.60.1.2 17945 1pk1B 89 0.2842 a.60.1.2 118712 1q06A 135 2.396 a.6.1.3 95493 1kmiZ 214 2.403 h.4.11.1 72752 1aq6A 253 2.550 c.108.1.1 43331 2cprA 124 3.040 a.60.8.4 130705 2f48A 555 3.569 c.89.1.1 132915 2ekgA 327 3.704 2fjcA 156 3.712 a.25.1.1 133559 2fdrA 229 5.115 c.108.1.6 133319 2dkyA 91 7.547 2rflA 173 7.711 1uouA 474 7.753 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2z90A 161 8.343 2h5gA 463 8.994 1ji4A 144 9.105 a.25.1.1 77117 2d5kA 156 10.04 3mdeA 385 11.23 a.29.3.1,e.6.1.1 16594,42855 1t2dA 322 11.24 c.2.1.5,d.162.1.1 99084,99085 2qg3A 208 11.64 2yysA 286 12.65 1qtrA 317 12.79 c.69.1.7 34660 2vigA 391 13.36 1jmsA 381 13.43 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2jgoA 31 13.57 1jqiA 388 13.80 a.29.3.1,e.6.1.1 67087,67088 2c41A 158 14.13 2zf5O 497 15.02 1wm1A 317 16.21 c.69.1.7 109405 1y7tA 327 16.32 c.2.1.5,d.162.1.1 122718,122719 1azwA 313 17.65 c.69.1.7 34658 1fnf 368 17.80 1y9bA 90 18.33 a.43.1.9 122777 3b5nC 70 18.80 1ou8A 111 19.34 b.136.1.1 93543 1oxnA 140 19.60 g.52.1.1 93704 1iirA 415 19.88 c.87.1.5 62453 2jbrA 422 21.57 1tiwA 602 22.28 a.176.1.1,c.1.23.2 112430,112431 1amoA 615 22.66 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1uqvA 85 22.92 a.60.1.2 99798 1t4oA 117 24.55 d.50.1.1 106425 2pytA 133 25.72 3cs3A 277 25.90 2pw4A 188 25.99 1ehyA 294 26.33 c.69.1.11 34693 2dvkA 188 26.58 1cosA 31 26.95 k.4.1.1 46405 1ox8A 107 27.90 b.136.1.1 93671 1r7mA 235 28.31 d.95.2.1,d.95.2.1 111713,111714 2vofA 157 28.77 2hazA 105 29.40 b.1.2.1 136303 2vm6A 150 30.48 2d29A 387 31.86 a.29.3.1,e.6.1.1 131157,131158 1zxxA 319 32.90 1o6aA 96 35.88 b.139.1.1 92562 1qaxA 428 37.37 d.58.20.1,d.179.1.1 39376,42597 2v7pA 310 38.04 2phjA 251 38.24 2fziA 206 38.68 c.71.1.1 134448 1u6rA 380 39.26 a.83.1.1,d.128.1.2 119600,119601 2hd9A 145 40.58 1u9lA 70 41.11 a.60.4.2 107751 2yv7A 260 41.71 1ez3A 127 42.26 a.47.2.1 17768 1fntc 245 43.72 1xg2B 153 43.96 1wftA 123 45.38 b.1.2.1 114592 2cklA 108 46.00 2rhwA 283 46.88 1iz7A 295 47.18 c.69.1.8 76982 1t6sA 162 47.94 a.4.5.60,a.4.5.60 112271,112272 1uujA 88 48.15 a.221.1.1 108046 1knxA 312 49.14 c.98.2.1,c.91.1.2 77459,77460 2a7lA 136 50.56 d.20.1.1 126350 3mddA 385 51.40 a.29.3.1,e.6.1.1 16592,42853 1y8xA 160 51.43 d.20.1.1 122769 1iu8A 206 51.57 c.56.4.1 71436 1dwkA 156 51.99 a.35.1.4,d.72.1.1 17075,39606 2jf2A 264 53.08 b.81.1.1 138289 2z2iA 191 55.95 1o9rA 162 56.60 a.25.1.1 86706 2fiaA 162 57.11 d.108.1.1 133514 2gr8A 99 59.07 d.24.1.4 135522 1f16A 192 59.57 f.1.4.1 43400 2q83A 346 59.83 2pfkA 320 60.06 c.89.1.1 35577 2go7A 207 61.16 c.108.1.6 135434 1lvlA 458 61.70 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2c2aA 258 63.00 a.30.2.1,d.122.1.3 129662,129663 1vr3A 191 63.06 b.82.1.6 120431 1v2dA 381 64.94 c.67.1.1 108281 2j5dA 45 65.14 1vrpA 381 65.27 a.83.1.1,d.128.1.2 120473,120474 1vj7A 393 65.52 a.211.1.1,d.218.1.8 100801,100802 1ceqA 316 65.97 c.2.1.5,d.162.1.1 30163,42130 2pujA 286 66.65 1bn6A 294 68.00 c.69.1.8 34678 1m3iA 471 68.41 f.9.1.1 91178 1swvA 267 71.44 c.108.1.3 112134 1exzA 141 71.54 a.26.1.2 16877 2hdoA 209 72.25 c.108.1.6 136345 1csbB 205 72.27 1a2zA 220 73.04 c.56.4.1 33794 1qsoA 149 73.67 d.108.1.1 40812 1ve9A 347 74.20 c.4.1.2,d.16.1.3 100571,100572 1ki9A 192 74.83 c.37.1.1 84404 2i33A 258 76.06 1tujA 123 77.45 1broA 277 77.48 c.69.1.12 34700 1s3zA 165 77.97 d.108.1.1 105250 1xqoA 256 78.19 a.96.1.6 115853 1y5iA 1246 78.55 b.52.2.2,c.81.1.1 122639,122640 3b85A 208 79.09 1uxjA 309 81.41 c.2.1.5,d.162.1.1 108112,108113 2e85A 159 82.23 1mzjA 339 82.34 c.95.1.2,c.95.1.2 79700,79701 1zuaX 317 83.18 1ojqA 212 83.27 d.166.1.1 93146 2fp7A 54 83.49 2vgxA 148 84.71 1pud 386 86.50 1un8A 552 87.56 c.119.1.2,a.208.1.1 103806,99661