# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 9.90e-10 a.60.1.2 100280 2f3nA 76 3.18e-09 a.60.1.2 132885 1b4fA 82 1.22e-08 a.60.1.2 17934 1b0xA 94 3.20e-08 a.60.1.2 17933 1ow5A 85 9.69e-08 a.60.1.2 93630 2e8oA 103 2.13e-06 3bs5B 80 2.60e-05 1oxjA 173 0.002478 a.60.1.2,a.118.1.13 87517,87518 1kw4A 89 0.004570 a.60.1.2 73077 2d3dA 88 0.04619 3bs5A 106 0.04644 3bs7A 78 0.09563 1cokA 68 0.1103 a.60.1.2 17945 1dxsA 80 0.1288 a.60.1.2 17944 1pk1B 89 0.2530 a.60.1.2 118712 2f48A 555 2.358 c.89.1.1 132915 1kmiZ 214 3.727 h.4.11.1 72752 1aq6A 253 4.066 c.108.1.1 43331 1q06A 135 4.187 a.6.1.3 95493 1iu8A 206 4.427 c.56.4.1 71436 1a2zA 220 4.487 c.56.4.1 33794 2fdrA 229 5.067 c.108.1.6 133319 3mdeA 385 5.732 a.29.3.1,e.6.1.1 16594,42855 2zf5O 497 5.820 2cprA 124 6.212 a.60.8.4 130705 2fjcA 156 7.900 a.25.1.1 133559 1uqvA 85 8.504 a.60.1.2 99798 2jbrA 422 8.659 2qg3A 208 8.675 1uouA 474 9.913 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1t2dA 322 10.83 c.2.1.5,d.162.1.1 99084,99085 1y7tA 327 11.34 c.2.1.5,d.162.1.1 122718,122719 1iirA 415 12.35 c.87.1.5 62453 2rflA 173 15.06 2z90A 161 16.19 2vigA 391 16.63 1amoA 615 17.32 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2ekgA 327 17.36 2d5kA 156 17.98 2pytA 133 17.99 2hazA 105 18.02 b.1.2.1 136303 1jqiA 388 18.04 a.29.3.1,e.6.1.1 67087,67088 1ji4A 144 18.22 a.25.1.1 77117 1v2dA 381 18.52 c.67.1.1 108281 2jgoA 31 19.96 2c41A 158 20.30 2dkyA 91 20.81 1r7mA 235 21.19 d.95.2.1,d.95.2.1 111713,111714 3cs3A 277 23.18 1jmsA 381 23.24 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2hd9A 145 23.75 3mddA 385 23.86 a.29.3.1,e.6.1.1 16592,42853 1m3iA 471 24.24 f.9.1.1 91178 1zxxA 319 24.96 2v7pA 310 25.83 2yysA 286 25.88 6ldhA 329 27.78 c.2.1.5,d.162.1.1 30161,42128 3b5nC 70 29.05 1y9bA 90 29.25 a.43.1.9 122777 2pw4A 188 29.25 1oxnA 140 29.81 g.52.1.1 93704 2pfkA 320 30.04 c.89.1.1 35577 2d29A 387 30.16 a.29.3.1,e.6.1.1 131157,131158 1qtrA 317 30.44 c.69.1.7 34660 1xdyA 298 32.01 d.176.1.1 115186 1augA 215 33.28 c.56.4.1 33798 2z1qA 577 34.92 2d4wA 504 35.13 1ou8A 111 35.64 b.136.1.1 93543 2pg0A 385 37.31 1cosA 31 38.84 k.4.1.1 46405 1wm1A 317 39.87 c.69.1.7 109405 2dvkA 188 40.26 1ojqA 212 41.84 d.166.1.1 93146 1u6rA 380 43.50 a.83.1.1,d.128.1.2 119600,119601 2vphA 100 43.87 1vrpA 381 44.39 a.83.1.1,d.128.1.2 120473,120474 1tiwA 602 44.57 a.176.1.1,c.1.23.2 112430,112431 1ceqA 316 45.16 c.2.1.5,d.162.1.1 30163,42130 1lmlA 478 45.35 d.92.1.3 40295 2daqA 110 46.65 b.34.9.2 131354 2z2iA 191 47.12 1dwkA 156 48.06 a.35.1.4,d.72.1.1 17075,39606 1broA 277 48.36 c.69.1.12 34700 1ox8A 107 49.28 b.136.1.1 93671 1zkdA 387 49.67 c.66.1.52 125184 2f6uA 234 50.15 c.1.4.1 133061 1eysC 382 51.39 a.138.1.2 19678 2h5gA 463 51.47 2go7A 207 55.03 c.108.1.6 135434 1u9lA 70 56.88 a.60.4.2 107751 1ehyA 294 57.31 c.69.1.11 34693 1azwA 313 57.75 c.69.1.7 34658 2c2aA 258 59.79 a.30.2.1,d.122.1.3 129662,129663 1ez3A 127 61.41 a.47.2.1 17768 1t4oA 117 61.55 d.50.1.1 106425 1lvlA 458 61.83 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2dxnA 274 61.92 1uxjA 309 62.46 c.2.1.5,d.162.1.1 108112,108113 1o6aA 96 63.88 b.139.1.1 92562 1w77A 228 64.46 c.68.1.13 120679 2gr8A 99 64.72 d.24.1.4 135522 1knxA 312 66.23 c.98.2.1,c.91.1.2 77459,77460 1sflA 238 66.26 c.1.10.1 112077 1gutA 68 69.30 b.40.6.1 65576 2phjA 251 70.64 1crkA 380 73.17 a.83.1.1,d.128.1.2 18458,41193 2bhwA 232 74.22 2yv7A 260 74.43 1swvA 267 75.44 c.108.1.3 112134 1o9rA 162 78.15 a.25.1.1 86706 1ldg 316 78.42 1s3zA 165 79.01 d.108.1.1 105250 2cklA 108 79.03 1x4rA 99 79.20 2rhwA 283 79.80 1ki9A 192 80.64 c.37.1.1 84404 1exzA 141 81.26 a.26.1.2 16877 2a6cA 83 81.54 a.35.1.13 126236 2hdoA 209 81.95 c.108.1.6 136345 2fiaA 162 84.02 d.108.1.1 133514 1cqwA 295 86.37 c.69.1.8 34679 1fnf 368 86.79 1xl4A 301 87.25 b.1.18.16,f.14.1.1 115430,115431 2hv2A 400 89.43