# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 8.68e-09 a.60.1.2 100280 1b4fA 82 1.27e-07 a.60.1.2 17934 1b0xA 94 3.29e-07 a.60.1.2 17933 2f3nA 76 8.54e-07 a.60.1.2 132885 1ow5A 85 1.01e-05 a.60.1.2 93630 2e8oA 103 2.68e-05 3bs5B 80 0.001115 1oxjA 173 0.02120 a.60.1.2,a.118.1.13 87517,87518 3bs5A 106 0.02759 2d3dA 88 0.04400 1kw4A 89 0.07010 a.60.1.2 73077 1cokA 68 0.4887 a.60.1.2 17945 3bs7A 78 0.6506 3bl4A 124 0.7554 1pk1B 89 1.698 a.60.1.2 118712 1jeqB 565 1.756 b.131.1.2,c.62.1.4 90368,90369 1aq6A 253 1.923 c.108.1.1 43331 1vl2A 421 2.452 c.26.2.1,d.210.1.1 108708,108709 1bev1 281 2.793 1jmsA 381 2.880 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1dxsA 80 3.092 a.60.1.2 17944 2qg3A 208 3.882 1y7yA 74 4.666 a.35.1.3 122729 1odfA 290 6.342 c.37.1.6 92782 1iu8A 206 6.863 c.56.4.1 71436 1hgeB 175 7.610 h.3.1.1 45680 2b5aA 77 8.500 a.35.1.3 127882 1j0fA 100 8.538 c.47.1.14 90739 1tiwA 602 8.815 a.176.1.1,c.1.23.2 112430,112431 1e7wA 291 9.96 c.2.1.2 59373 2jixB 225 13.71 2dvkA 188 15.01 1e1hA 287 18.30 d.92.1.7 83167 3bgeA 201 19.60 1ki9A 192 24.96 c.37.1.1 84404 3d2lA 243 26.83 1i8dA 213 27.09 b.43.4.3,b.43.4.3 61953,61954 1bo9A 73 30.29 a.65.1.1 18146 2viuB 175 32.37 h.3.1.1 45676 1ewjA 126 33.44 d.32.1.2 59526 2f48A 555 37.71 c.89.1.1 132915 1vykA 149 43.38 2gboA 104 43.38 a.23.6.1 134923 2pfkA 320 43.89 c.89.1.1 35577 2e1nA 138 44.40 2dt5A 211 44.53 a.4.5.38,c.2.1.12 131708,131709 1ly1A 181 45.08 c.37.1.1 74334 2oexA 351 47.46 2p2wA 367 48.16 2abyA 146 48.90 1ye8A 178 49.14 c.37.1.11 123010 1h4lD 147 49.15 a.74.1.1 70873 1ji4A 144 49.57 a.25.1.1 77117 1z8oA 404 51.26 a.104.1.1 124722 1lj1A 571 51.79 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1r1a1 287 52.06 2o01F 154 52.16 1fntc 245 52.66 1knxA 312 52.89 c.98.2.1,c.91.1.2 77459,77460 1hxs1 302 53.46 2hztA 107 53.66 1efuA 385 54.80 b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1jipA 403 54.94 a.104.1.1 66748 1a8h 500 55.94 2djkA 133 57.02 c.47.1.2 131548 2a73B 991 57.44 1w77A 228 57.61 c.68.1.13 120679 1hc7A 477 58.54 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1oxnA 140 58.96 g.52.1.1 93704 1dwkA 156 59.59 a.35.1.4,d.72.1.1 17075,39606 1jsmB 176 60.08 h.3.1.1 63265 2a4dA 160 60.40 d.20.1.1 126152 2pytA 133 61.44 2dqlA 115 64.07 1t4oA 117 64.56 d.50.1.1 106425 1rztA 331 66.24 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2rfbA 343 67.91 1omhA 293 68.49 d.89.1.5 93348 2fjcA 156 68.62 a.25.1.1 133559 2bjfA 329 69.21 1rf8B 100 70.05 a.210.1.1 97371 1dgwA 178 70.55 b.82.1.2 28090 2ez6A 221 71.36 a.149.1.1,d.50.1.1 132616,132617 1augA 215 76.61 c.56.4.1 33798 1u9lA 70 76.90 a.60.4.2 107751 1wleA 501 77.52 1qagA 226 80.69 a.40.1.1,a.40.1.1 17400,17401 2h5gA 463 81.62 1b8aA 438 81.67 b.40.4.1,d.104.1.1 25244,40765 2fmpA 335 82.60 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 1jeyA 609 84.50 b.131.1.1,c.62.1.3 90370,90371 2z90A 161 85.20 1mzjA 339 85.75 c.95.1.2,c.95.1.2 79700,79701 1u4qA 322 86.58 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1h6wA 312 87.07 d.231.1.1,b.108.1.1 83059,83060 1zxxA 319 87.80 1n3kA 130 88.86 a.77.1.4 79965 1uthA 315 89.51 c.94.1.1 108032 1a79A 171 89.68 c.52.2.1,d.75.1.1 33340,39739