# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f3nA 76 0.006026 a.60.1.2 132885 1v38A 78 0.1052 a.60.1.2 100280 1mu5A 471 1.072 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b0xA 94 2.182 a.60.1.2 17933 1b4fA 82 3.841 a.60.1.2 17934 2e8oA 103 3.842 3bs5B 80 4.706 2nn6E 305 6.023 3bneA 839 7.383 1ygeA 839 8.681 a.119.1.1,b.12.1.1 19234,23634 1yge 839 9.934 1ow5A 85 14.63 a.60.1.2 93630 1yn9A 169 14.69 1uyrA 737 15.87 c.14.1.4,c.14.1.4 100188,100189 2ix0A 663 16.42 1xxpA 306 18.73 c.45.1.2 122423 2c2uA 207 20.35 1k8tA 510 27.68 e.41.1.1 68316 1gln 468 28.43 2or4A 709 28.81 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2qg3A 208 29.52 1lt4A 247 29.79 d.166.1.1 42231 1j09A 468 30.28 a.97.1.1,c.26.1.1 77025,77026 1mtyB 384 30.56 a.25.1.2 16740 2je6B 250 30.92 2c1cA 312 31.96 c.56.5.1 129630 1dx0A 219 33.43 d.6.1.1 37324 2a65A 519 34.01 2z3zA 706 34.49 2f6rA 281 35.14 1r9jA 673 35.22 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1zclA 180 35.55 1ivhA 394 37.14 a.29.3.1,e.6.1.1 16608,42869 2pa5A 314 38.10 2g5cA 281 41.12 a.100.1.12,c.2.1.6 134646,134647 2q7sA 290 44.86 2jbrA 422 45.63 1g2nA 264 50.29 a.123.1.1 60227 2i9iA 254 50.36 2z4sA 440 50.42 1kf6B 243 51.25 a.1.2.1,d.15.4.2 72397,72398 1loxA 662 51.93 a.119.1.2,b.12.1.1 19238,23638 1lox 662 52.31 1irxA 523 52.49 a.97.1.2,c.26.1.1 71378,71379 2hbjA 410 54.72 a.60.8.4,c.55.3.5 136311,136312 1g59A 468 54.75 a.97.1.1,c.26.1.1 60257,60258 1wkbA 810 55.87 2vdwB 287 56.00 1mx0A 472 57.99 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2hqsA 415 59.09 b.68.4.1,c.51.2.1 136662,136663 1mmoB 384 60.92 a.25.1.2 16768 2ossA 127 63.19 1iu8A 206 63.41 c.56.4.1 71436 1k32A 1045 63.54 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1wab 232 63.66 1h0cA 392 64.52 c.67.1.3 83424 1e7wA 291 65.22 c.2.1.2 59373 1tjoA 182 65.58 a.25.1.1 112461 1hwxA 501 66.24 c.2.1.7,c.58.1.1 30250,33898 1s5dA 240 66.75 d.166.1.1 98541 2gtdA 251 67.92 c.55.1.13,c.55.1.13 135634,135635 3bexA 249 68.11 1gttA 429 68.29 d.177.1.1,d.177.1.1 70529,70530 1jqiA 388 68.33 a.29.3.1,e.6.1.1 67087,67088 2es4D 332 68.48 1g5yA 238 68.55 a.123.1.1 60294 2q62A 247 68.67 2nrhA 219 71.57 c.55.1.13,c.55.1.13 138523,138524 2ootA 709 74.51 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2incB 322 82.54 a.25.1.2 137525 2e1dA 331 83.13 1t0qB 330 83.88 a.25.1.2 106221 2ox6A 166 85.46 1zxxA 319 85.70 2inpC 328 86.88 1kw4A 89 87.44 a.60.1.2 73077