Best Alignments for T0500

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1v38A	1.1073e-05	1v38A/T0500-1v38A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1b4fA	1.6750e-05	1b4fA/T0500-1b4fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
1b0xA	3.6911e-05	1b0xA/T0500-1b0xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2f3nA	3.5097e-03	2f3nA/T0500-2f3nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.1.2
2e8oA	1.7069e-01	2e8oA/T0500-2e8oA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bs7A	1.9506e+00	3bs7A/T0500-3bs7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bs5A	3.6071e+00	3bs5A/T0500-3bs5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zjaA	7.7806e+00	1zjaA/T0500-1zjaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dh2A	1.0059e+01	2dh2A/T0500-2dh2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d3dA	1.4627e+01	2d3dA/T0500-2d3dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bs5B	1.4668e+01	3bs5B/T0500-3bs5B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bhcA	1.5004e+01	3bhcA/T0500-3bhcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2fbaA	1.7088e+01	2fbaA/T0500-2fbaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.102.1.1
2oszA	1.7504e+01	2oszA/T0500-2oszA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cxjA	1.7953e+01	3cxjA/T0500-3cxjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1eg3A	1.9606e+01	1eg3A/T0500-1eg3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.7 a.39.1.7 b.72.1.1
1u0jA	2.1447e+01	1u0jA/T0500-1u0jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.20
1uok	2.1699e+01	1uok/T0500-1uok-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2jgoA	2.2342e+01	2jgoA/T0500-2jgoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1k1xA	2.3832e+01	1k1xA/T0500-1k1xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.8.3.2 b.30.5.8 c.6.2.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001