# List of top-scoring protein chains for T0500.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2eaoA 99 0.003252 2eamA 80 0.04261 2qkqA 83 0.08163 2e8nA 88 0.3422 1sggA 75 0.5967 a.60.1.2 17943 2ae6A 166 2.846 d.108.1.1 126600 1ucvA 81 3.004 a.60.1.2 99191 1b4fA 82 4.745 a.60.1.2 17934 1zzmA 259 4.999 c.1.9.12 125911 1y10A 407 7.088 1twfA 1733 7.289 e.29.1.2 112725 1ji4A 144 7.487 a.25.1.1 77117 2aamA 309 11.27 c.1.8.15 126489 1b0xA 94 11.70 a.60.1.2 17933 2v7gA 557 12.07 1deqA 390 14.14 i.9.1.1 45987 1vinA 268 16.08 a.74.1.1,a.74.1.1 18354,18355 1po0A 751 16.13 f.4.3.3 94960 1uwlA 557 19.23 e.51.1.1 108067 2b9rA 269 20.61 1kmoA 774 22.24 f.4.3.3 72753 2ismA 352 23.83 2jgzB 260 24.33 1s78A 624 24.47 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 98616,98617,98618,98619 1e9hB 261 26.46 a.74.1.1,a.74.1.1 64813,64814 2g9xB 262 26.59 a.74.1.1,a.74.1.1 134845,134846 1wgzA 510 26.90 3bhtB 262 27.35 1h1rB 258 28.23 a.74.1.1,a.74.1.1 76490,76491 2an1A 292 29.18 1xz0A 279 29.24 b.1.1.2,d.19.1.1 122461,122462 2uueB 259 29.30 a.74.1.1,a.74.1.1 139973,139974 1lshA 1056 29.88 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1uwkA 557 30.01 e.51.1.1 108065 2iw9B 260 30.11 a.74.1.1,a.74.1.1 137748,137749 2f3nA 76 30.20 a.60.1.2 132885 1w1uA 557 30.52 e.51.1.1 109079 2cchB 260 31.08 a.74.1.1,a.74.1.1 130237,130238 1ixmA 192 31.14 d.123.1.1 41114 1onqA 283 31.15 b.1.1.2,d.19.1.1 93365,93366 2pe4A 424 33.05 1x40A 91 33.89 a.60.1.2 121675 1vz6A 393 34.05 d.154.1.2 108949 1f51A 182 34.55 d.123.1.1 41116 1vywB 265 34.90 a.74.1.1,a.74.1.1 108923,108924 2ewsA 287 38.03 1q1rA 431 39.05 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1v38A 78 39.35 a.60.1.2 100280 2ev1A 222 40.03 3c3jA 384 41.05 2fl8A 602 44.29 1cptA 428 45.02 a.104.1.1 18968 2p3yA 491 45.99 1n8zC 607 46.25 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80322,80323,80324,80325 1v0wA 506 46.82 d.136.1.2,d.136.1.2 108220,108221 2j7uA 635 49.67 1g7oA 215 49.69 a.45.1.1,c.47.1.5 60332,60333 1qusA 322 50.31 d.2.1.6 36991 1ltmA 320 50.66 d.2.1.6 36992 2fkcA 247 51.94 1fiwA 290 52.62 1uluA 261 55.44 c.2.1.2 113292 2hy1A 280 57.45 1vl2A 421 58.28 c.26.2.1,d.210.1.1 108708,108709 1c3mA 147 58.36 b.77.3.1 27983 2hyoA 280 59.14 1z19A 283 60.57 2cqmA 122 60.62 2derA 380 61.10 2hypA 280 61.47 1f0iA 504 61.66 d.136.1.2,d.136.1.2 59566,59567 1p7dA 283 62.08 d.163.1.1 94219 2cnrA 82 65.58 2j6iA 364 68.72 2z90A 161 69.74 1hfxA 123 70.45 d.2.1.2 36600 1uayA 242 71.65 c.2.1.2 88390 2d40A 354 72.06 2fssA 365 72.78 2jgoA 29 72.86 1jw3A 140 72.99 d.208.1.1 67373 1y9iA 178 75.11 a.195.1.1 116586 2a91A 517 76.60 1xd4A 852 78.55 a.87.1.1,a.117.1.1,b.55.1.1 115149,115150,115151 2henA 286 78.58 2bl0B 145 80.25 1fszA 372 83.06 c.32.1.1,d.79.2.1 31750,39802 1sj8A 308 83.69 a.215.1.1,a.216.1.1 105606,105607 2pfyA 301 84.62 1uemA 117 87.77 b.1.2.1 99267 1s5jA 847 88.37 c.55.3.5,e.8.1.1 112040,112041