# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.29e-05 a.60.1.2 100280 1b4fA 82 4.09e-05 a.60.1.2 17934 1b0xA 94 7.68e-05 a.60.1.2 17933 2f3nA 76 0.002539 a.60.1.2 132885 2e8oA 103 0.1186 1zjaA 557 0.9177 2dh2A 424 1.326 3bs7A 78 1.503 3bs5A 106 3.112 2fbaA 492 3.917 a.102.1.1 133239 1uok 558 4.985 3bhcA 249 5.200 1uokA 558 6.357 b.71.1.1,c.1.8.1 27801,28788 3cxjA 165 6.737 2jgoA 31 7.121 1eg3A 261 7.187 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2oszA 93 7.959 1y9bA 90 7.992 a.43.1.9 122777 1ztpA 251 8.570 d.86.1.2 125649 2d2sA 235 8.579 a.118.17.2 131188 1g5aA 628 8.956 b.71.1.1,c.1.8.1 65152,65153 2ze0A 555 9.853 1u0jA 267 10.09 c.37.1.20 107546 1ayx 492 10.23 1k1xA 659 10.57 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2hqyA 305 11.77 1qqfA 277 12.82 a.102.4.4 18875 1cosA 31 13.12 k.4.1.1 46405 7taa 478 16.13 2cchB 260 17.22 a.74.1.1,a.74.1.1 130237,130238 2z3tA 425 17.75 2fkcA 247 18.97 2awfA 172 19.19 d.20.1.1 127432 2nuwA 288 19.54 1s1fA 406 19.80 a.104.1.1 112008 2acyA 98 21.26 d.58.10.1 39298 1y71A 130 22.38 b.34.16.1 122677 2iagA 482 25.22 2avuE 192 25.42 1smd 496 25.90 1ua7A 422 26.40 b.71.1.1,c.1.8.1 107759,107760 2rfgA 297 26.91 1vljA 407 27.82 e.22.1.2 108832 2f6hX 419 27.88 1a8rA 221 27.89 d.96.1.1 40587 3bujA 397 28.18 1d2fA 390 29.09 c.67.1.3 34411 1wzlA 585 29.54 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2d3dA 88 29.59 2npsC 81 30.40 1ou8A 111 33.29 b.136.1.1 93543 1gaiA 472 33.73 a.102.1.1 18819 2vofA 157 34.75 1gxmA 332 37.12 a.102.5.1 76371 1j0hA 588 37.25 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2p0kA 212 37.72 1g63A 181 38.21 c.34.1.1 60299 2ownA 262 39.05 1aa7A 158 39.09 a.95.1.1 18741 1keaA 221 39.39 a.96.1.2 68491 2h21A 440 39.42 a.166.1.1,b.85.7.3 135976,135977 1i7kA 179 39.74 d.20.1.1 61889 2i53A 258 40.15 2pftA 571 40.23 2afaA 425 40.42 a.102.1.3 126668 3cexA 172 41.97 1jhfA 202 42.21 a.4.5.2,b.87.1.1 63057,63058 1xszA 356 42.33 a.118.3.1,d.129.9.1 116005,116006 2b1xB 172 42.48 d.17.4.4 127677 2bkdN 134 42.75 1yfnA 118 43.26 b.136.1.1 123080 3cc1A 433 43.70 2bemA 170 44.54 b.1.18.2 116698 2vsfA 602 44.72 1h7cA 108 45.60 a.7.5.1 70914 2q4kA 251 46.61 d.86.1.2 139864 1rrmA 386 47.65 e.22.1.2 105081 2vc6A 292 49.74 1jhdA 396 50.40 b.122.1.3,c.26.1.5 66712,66713 1zruA 264 50.72 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1wxiA 275 52.00 c.26.2.1 121400 1w3iA 293 53.30 c.1.10.1 109152 1w98B 283 54.99 1qf8A 182 55.03 g.41.4.1 45212 1kapP 479 55.33 b.80.7.1,d.92.1.6 28012,40298 2a4dA 160 56.70 d.20.1.1 126152 2ehhA 294 56.93 2nmlA 104 58.03 d.330.1.1 138371 2zc2A 78 60.31 2vqeS 93 60.56 1yfuA 174 60.68 b.82.1.20 123094 1gwiA 411 61.48 a.104.1.1 76364 1o5kA 306 61.55 c.1.10.1 92504 2hyxA 352 61.69 1f74A 293 61.81 c.1.10.1 29079 1wa3A 205 62.65 c.1.10.1 120802 2purA 292 63.77 2ibnA 250 63.84 a.211.1.4 137195 1p1lA 102 64.39 d.58.5.2 87695 3ceyA 474 64.43 2ev1A 222 64.60 3c3pA 210 64.78 2bj7A 138 64.95 a.43.1.3,d.58.18.4 128608,128609 1edgA 380 65.16 c.1.8.3 28807 1jyhA 157 65.63 d.60.1.3 71956 1bplB 294 65.66 b.71.1.1 27716 1uarA 285 66.01 c.46.1.2,c.46.1.2 107762,107763 1w2yA 229 67.27 a.204.1.1 109140 1jv1A 505 67.33 c.68.1.5 71892 1ukuA 102 68.07 d.58.5.2 99533 1v8dA 235 69.07 c.140.1.1 108425 2fkkA 206 69.84 2dbnA 461 72.47 1b35C 282 73.84 1qsdA 106 75.38 a.7.5.1 16335 1mun 225 76.04 1p0yA 444 76.33 a.166.1.1,b.85.7.3 87654,87655 2f6kA 307 77.20 c.1.9.15 133047 2e8yA 718 77.87 2fo3A 125 79.05 d.20.1.1 133868 2jgzB 260 80.02 1g94A 448 80.27 b.71.1.1,c.1.8.1 65169,65170 1e0cA 271 80.64 c.46.1.2,c.46.1.2 32717,32718 2d4cA 256 80.86 a.238.1.1 131246 1j93A 353 80.92 c.1.22.1 66454 1gl2D 65 81.92 h.1.15.1 65281 2q71A 356 82.47 2guyA 478 84.71 b.71.1.1,c.1.8.1 135754,135755 1yirA 408 84.98 c.1.17.2,d.41.2.2 123330,123331 2im5A 394 86.66 1cunA 213 87.41 a.7.1.1,a.7.1.1 16313,16314 2p32A 120 87.57 1n40A 396 87.75 a.104.1.1 79977 1x9lA 149 88.17 b.2.10.1 109528 1dmhA 311 88.80 b.3.6.1 22633 2imsA 171 89.10 2pw4A 188 89.88