# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b4fA 82 0.000155 a.60.1.2 17934 1v38A 78 0.000185 a.60.1.2 100280 1b0xA 94 0.000326 a.60.1.2 17933 2f3nA 76 0.009173 a.60.1.2 132885 2e8oA 103 0.5865 1zjaA 557 1.721 2dh2A 424 1.756 1gaiA 472 4.383 a.102.1.1 18819 2fbaA 492 4.696 a.102.1.1 133239 1uokA 558 5.014 b.71.1.1,c.1.8.1 27801,28788 2hqyA 305 5.790 3bs7A 78 6.148 2ze0A 555 6.149 1uok 558 6.785 1ztpA 251 7.270 d.86.1.2 125649 3cxjA 165 7.316 2oszA 93 7.617 1k1xA 659 7.668 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2jgoA 31 8.187 1g5aA 628 8.478 b.71.1.1,c.1.8.1 65152,65153 2d2sA 235 8.819 a.118.17.2 131188 1y9bA 90 9.439 a.43.1.9 122777 1ayx 492 9.716 1u0jA 267 10.64 c.37.1.20 107546 2afaA 425 12.76 a.102.1.3 126668 2qniA 219 13.53 1qqfA 277 13.54 a.102.4.4 18875 3bs5A 106 13.56 1gxmA 332 13.68 a.102.5.1 76371 7taa 478 14.13 2cchB 260 14.58 a.74.1.1,a.74.1.1 130237,130238 1s1fA 406 16.11 a.104.1.1 112008 1cosA 31 16.77 k.4.1.1 46405 2z3tA 425 16.88 2avuE 192 16.88 3bhcA 249 17.31 3bujA 397 17.39 1ua7A 422 17.67 b.71.1.1,c.1.8.1 107759,107760 2bkdN 134 18.43 1wzlA 585 23.67 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2npsC 81 23.87 2f6kA 307 24.87 c.1.9.15 133047 1eg3A 261 25.28 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1qsdA 106 25.41 a.7.5.1 16335 2f6hX 419 26.14 2dbnA 461 27.00 2fkcA 247 27.09 2pftA 571 29.20 2vqeS 93 30.65 2ownA 262 30.94 1h7cA 108 31.05 a.7.5.1 70914 1gai 472 31.98 1dmhA 311 32.35 b.3.6.1 22633 2ibnA 250 32.49 a.211.1.4 137195 3cc1A 433 32.86 2h21A 440 33.79 a.166.1.1,b.85.7.3 135976,135977 1smd 496 34.84 1yfnA 118 35.76 b.136.1.1 123080 2nuwA 288 36.84 1ou8A 111 37.38 b.136.1.1 93543 3cexA 172 37.45 1w98B 283 38.91 1keaA 221 39.05 a.96.1.2 68491 2i53A 258 41.49 2vofA 157 42.08 1gwiA 411 42.95 a.104.1.1 76364 1jhdA 396 43.50 b.122.1.3,c.26.1.5 66712,66713 1aa7A 158 44.13 a.95.1.1 18741 1xszA 356 44.14 a.118.3.1,d.129.9.1 116005,116006 1edgA 380 45.00 c.1.8.3 28807 1d2fA 390 45.79 c.67.1.3 34411 1bplB 294 46.22 b.71.1.1 27716 1w2yA 229 46.60 a.204.1.1 109140 1yirA 408 46.85 c.1.17.2,d.41.2.2 123330,123331 2iagA 482 46.97 1uarA 285 49.71 c.46.1.2,c.46.1.2 107762,107763 2b1xB 172 51.70 d.17.4.4 127677 1zo4A 473 51.81 1iv8A 720 52.07 b.71.1.1,c.1.8.1 76842,76843 2rfgA 297 53.14 2acyA 98 53.21 d.58.10.1 39298 1j0hA 588 54.53 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2ysrA 105 54.76 2fkkA 206 54.87 3c3pA 210 54.88 1g94A 448 55.77 b.71.1.1,c.1.8.1 65169,65170 1kapP 479 58.96 b.80.7.1,d.92.1.6 28012,40298 1j7xA 302 59.75 c.14.1.2 66425 1y71A 130 61.76 b.34.16.1 122677 1qf8A 182 61.83 g.41.4.1 45212 1yfuA 174 62.13 b.82.1.20 123094 1zruA 264 62.84 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2guyA 478 63.21 b.71.1.1,c.1.8.1 135754,135755 1wxiA 275 64.15 c.26.2.1 121400 3cssA 267 66.28 1jyhA 157 66.85 d.60.1.3 71956 2zc2A 78 67.82 1f74A 293 70.74 c.1.10.1 29079 2jgzB 260 71.24 2bj7A 138 72.64 a.43.1.3,d.58.18.4 128608,128609 1pwgA 349 72.74 e.3.1.1 104340 1ei5A 520 75.07 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 3b98A 475 77.05 1mv8A 436 77.37 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1e0cA 271 78.33 c.46.1.2,c.46.1.2 32717,32718 1a0pA 290 80.17 a.60.9.1,d.163.1.1 18105,42165 2zblA 421 80.63 1mxgA 435 80.70 b.71.1.1,c.1.8.1 85193,85194 3ceyA 474 80.81 2ij2A 470 82.30 a.104.1.1 137449 2zbwA 335 82.51 2hyxA 352 83.85 2p0kA 212 84.40 1oc7A 364 84.84 c.6.1.1 86794 1jv1A 505 85.42 c.68.1.5 71892 2ehhA 294 85.73 1jaeA 471 87.42 b.71.1.1,c.1.8.1 27773,28760