# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b4fA 82 1.20e-05 a.60.1.2 17934 1v38A 78 2.52e-05 a.60.1.2 100280 1b0xA 94 2.81e-05 a.60.1.2 17933 2f3nA 76 0.002015 a.60.1.2 132885 2e8oA 103 0.09468 1zjaA 557 0.1533 2dh2A 424 1.072 1k1xA 659 2.129 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1zruA 264 3.644 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1smd 496 3.677 1uok 558 3.990 3bs7A 78 4.359 3bhcA 249 4.842 1uokA 558 5.169 b.71.1.1,c.1.8.1 27801,28788 1ayx 492 5.850 1u0jA 267 6.542 c.37.1.20 107546 1y71A 130 6.654 b.34.16.1 122677 7taa 478 6.841 2ze0A 555 7.058 2fbaA 492 7.136 a.102.1.1 133239 3cc1A 433 8.534 3cxjA 165 9.191 1ua7A 422 9.288 b.71.1.1,c.1.8.1 107759,107760 1a8rA 221 9.345 d.96.1.1 40587 1ztpA 251 10.43 d.86.1.2 125649 3ceyA 474 11.87 3bs5A 106 11.92 2nuwA 288 12.39 1y9bA 90 12.44 a.43.1.9 122777 2oszA 93 13.44 2d2sA 235 13.46 a.118.17.2 131188 1t7vA 278 14.69 b.1.1.2,d.19.1.1 112302,112303 2jgoA 31 14.90 1gaiA 472 15.08 a.102.1.1 18819 1eg3A 261 15.08 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1dmhA 311 15.27 b.3.6.1 22633 2ownA 262 15.92 1ei5A 520 17.05 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 2acyA 98 17.59 d.58.10.1 39298 2hqyA 305 18.30 2pqvA 154 19.54 3cexA 172 20.04 2cchB 260 20.37 a.74.1.1,a.74.1.1 130237,130238 1hx0A 496 21.89 b.71.1.1,c.1.8.1 61346,61347 2q2gA 180 23.18 1g94A 448 24.32 b.71.1.1,c.1.8.1 65169,65170 2bkdN 134 24.58 2npsC 81 25.04 2ovrB 445 25.17 1sfnA 246 25.30 b.82.1.11 105496 1bplB 294 25.36 b.71.1.1 27716 1jaeA 471 25.44 b.71.1.1,c.1.8.1 27773,28760 2guyA 478 27.67 b.71.1.1,c.1.8.1 135754,135755 1iv8A 720 27.90 b.71.1.1,c.1.8.1 76842,76843 1yirA 408 28.96 c.1.17.2,d.41.2.2 123330,123331 1cosA 31 29.07 k.4.1.1 46405 1b35C 282 29.32 1jh3A 107 29.44 d.66.1.4 71661 1qqfA 277 30.19 a.102.4.4 18875 1jatA 155 30.48 d.20.1.1 62818 1j0hA 588 30.91 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2p0kA 212 30.92 2ev1A 222 31.13 2j0pA 345 31.25 e.62.1.1 137903 2fkcA 247 31.84 2im5A 394 32.03 1p0yA 444 34.11 a.166.1.1,b.85.7.3 87654,87655 1ou8A 111 34.83 b.136.1.1 93543 1s1fA 406 36.09 a.104.1.1 112008 1j9lA 247 36.91 c.106.1.1 62762 2rfgA 297 37.09 1lnsA 763 37.66 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2afaA 425 38.55 a.102.1.3 126668 1fl2A 310 38.77 c.3.1.5,c.3.1.5 59869,59870 1k3xA 262 40.17 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2h21A 440 40.19 a.166.1.1,b.85.7.3 135976,135977 1d2fA 390 40.20 c.67.1.3 34411 1wa3A 205 40.34 c.1.10.1 120802 1w3iA 293 41.40 c.1.10.1 109152 1j7xA 302 41.50 c.14.1.2 66425 1jyhA 157 42.11 d.60.1.3 71956 2z3tA 425 42.65 2io8A 619 43.09 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 1iakA 199 43.31 b.1.1.2,d.19.1.1 21625,38199 1wxiA 275 43.50 c.26.2.1 121400 1mtyD 512 44.10 a.25.1.2 16742 2gysA 419 44.34 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 3d2uA 281 44.35 1gai 472 45.10 1eswA 500 45.54 c.1.8.1 59500 1gxmA 332 46.11 a.102.5.1 76371 1qsdA 106 46.22 a.7.5.1 16335 2vofA 157 46.57 1keaA 221 46.59 a.96.1.2 68491 3c99A 432 48.12 1uwkA 557 48.26 e.51.1.1 108065 2q4kA 251 48.66 d.86.1.2 139864 1wzlA 585 48.72 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2dc4A 165 48.79 1sznA 417 48.98 b.71.1.1,c.1.8.1 106162,106163 2c71A 216 48.99 c.6.2.3 130017 1u00A 227 49.09 a.8.4.1,b.130.1.1 112900,112901 1gl2D 65 49.21 h.1.15.1 65281 1yfnA 118 50.14 b.136.1.1 123080 1jv1A 505 51.36 c.68.1.5 71892 2vrqA 496 51.68 2b1xB 172 51.70 d.17.4.4 127677 1ukuA 102 51.76 d.58.5.2 99533 2i53A 258 51.97 2ikqA 270 53.50 2vqeS 93 53.81 2hq2A 354 54.40 e.62.1.1 136656 1h7cA 108 55.76 a.7.5.1 70914 1p1lA 102 56.17 d.58.5.2 87695 1kr4A 125 56.98 d.58.5.2 72889 2e6cA 244 58.06 1sgvA 316 58.40 b.122.1.1,d.265.1.2 98858,98859 2f6hX 419 59.17 3c3pA 210 59.46 2r47A 157 59.51 1r9hA 135 59.80 d.26.1.1 97260 2g17A 337 60.29 c.2.1.3,d.81.1.1 134512,134513 2zc2A 78 60.83 1ako 268 61.80 1xkyA 301 62.45 c.1.10.1 122094 2pftA 571 62.56 2bdqA 224 63.48 1w6vA 141 64.12 d.324.1.1 120674 1z2uA 150 64.17 d.20.1.1 124389 1h641 75 64.34 2ysrA 105 64.36 2jgzB 260 65.11 1gjwA 637 65.37 b.71.1.1,c.1.8.1 60582,60583 2ehhA 294 67.97 1ntyA 311 68.51 a.87.1.1,b.55.1.1 103873,103874 3dhpA 496 72.32 1dkzA 219 73.96 a.8.4.1,b.130.1.1 90345,90346 1zghA 260 74.90 b.46.1.1,c.65.1.1 125028,125029 1ht6A 405 74.93 b.71.1.1,c.1.8.1 83629,83630 1pwgA 349 75.08 e.3.1.1 104340 2d3dA 88 75.22 2bb6A 414 75.89 1aa7A 158 76.29 a.95.1.1 18741 1mv8A 436 76.46 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2vsfA 602 77.56 1wy2A 351 77.59 1o5kA 306 78.93 c.1.10.1 92504 1ly2A 130 80.86 g.18.1.1,g.18.1.1 74335,74336 1i7kA 179 81.01 d.20.1.1 61889 2purA 292 81.46 1r1mA 164 82.08 d.79.7.1 96820 1kxuA 333 83.04 a.74.1.1,a.74.1.1 18358,18359 2zbwA 335 84.50 2vc6A 292 84.79 1f74A 293 86.21 c.1.10.1 29079 2ei9A 240 86.30 3cfsB 414 86.60