# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.46e-05 a.60.1.2 100280 1b4fA 82 2.64e-05 a.60.1.2 17934 1b0xA 94 3.92e-05 a.60.1.2 17933 2f3nA 76 0.002989 a.60.1.2 132885 2e8oA 103 0.2020 1zjaA 557 1.772 3bhcA 249 2.336 3bs7A 78 2.538 2dh2A 424 2.651 3bs5A 106 3.835 1k1xA 659 3.990 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1zruA 264 4.228 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1u0jA 267 4.894 c.37.1.20 107546 2fbaA 492 5.248 a.102.1.1 133239 1eg3A 261 6.252 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 3cxjA 165 7.594 2jgoA 31 7.999 1y9bA 90 8.198 a.43.1.9 122777 1uok 558 8.226 2d2sA 235 9.341 a.118.17.2 131188 2bkdN 134 10.61 2oszA 93 10.73 1ayx 492 11.25 2acyA 98 11.37 d.58.10.1 39298 1y71A 130 13.53 b.34.16.1 122677 2nuwA 288 13.64 1cosA 31 16.51 k.4.1.1 46405 1ztpA 251 17.64 d.86.1.2 125649 2rfgA 297 17.71 1yirA 408 19.45 c.1.17.2,d.41.2.2 123330,123331 2ze0A 555 19.57 1uokA 558 19.89 b.71.1.1,c.1.8.1 27801,28788 2fkcA 247 20.69 2cchB 260 20.83 a.74.1.1,a.74.1.1 130237,130238 1rrmA 386 20.87 e.22.1.2 105081 1qqfA 277 20.91 a.102.4.4 18875 2z3tA 425 21.44 1wzlA 585 22.00 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1t7vA 278 22.92 b.1.1.2,d.19.1.1 112302,112303 2h21A 440 24.38 a.166.1.1,b.85.7.3 135976,135977 1ua7A 422 24.82 b.71.1.1,c.1.8.1 107759,107760 1jh3A 107 25.12 d.66.1.4 71661 1d2fA 390 25.89 c.67.1.3 34411 2vsfA 602 25.91 2p0kA 212 26.14 1g5aA 628 26.31 b.71.1.1,c.1.8.1 65152,65153 1gaiA 472 26.55 a.102.1.1 18819 1aa7A 158 26.99 a.95.1.1 18741 1vljA 407 27.77 e.22.1.2 108832 2f6kA 307 28.07 c.1.9.15 133047 2ev1A 222 28.49 1s1fA 406 28.87 a.104.1.1 112008 1qf8A 182 29.41 g.41.4.1 45212 2pftA 571 29.50 3cexA 172 31.10 3bujA 397 32.96 7taa 478 33.06 1h7cA 108 35.97 a.7.5.1 70914 2vc6A 292 36.11 1ou8A 111 36.66 b.136.1.1 93543 1keaA 221 36.80 a.96.1.2 68491 2ibnA 250 37.45 a.211.1.4 137195 1wxiA 275 37.93 c.26.2.1 121400 1wa3A 205 39.00 c.1.10.1 120802 2nmlA 104 39.17 d.330.1.1 138371 2hyxA 352 39.21 2hqyA 305 39.40 1j0hA 588 39.51 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2ysrA 105 39.80 3pcgM 238 40.38 b.3.6.1 22742 1a8rA 221 40.67 d.96.1.1 40587 2purA 292 41.08 1mv8A 436 41.43 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2hf9A 226 41.69 2q71A 356 44.04 1p0yA 444 45.24 a.166.1.1,b.85.7.3 87654,87655 1gxmA 332 45.56 a.102.5.1 76371 1p1lA 102 45.97 d.58.5.2 87695 1kapP 479 46.04 b.80.7.1,d.92.1.6 28012,40298 1yfnA 118 46.65 b.136.1.1 123080 1w2yA 229 48.60 a.204.1.1 109140 2vqeS 93 48.65 1jhdA 396 49.28 b.122.1.3,c.26.1.5 66712,66713 1o5kA 306 50.07 c.1.10.1 92504 2npsC 81 51.23 1j9lA 247 53.15 c.106.1.1 62762 1w3iA 293 54.94 c.1.10.1 109152 1musA 477 55.21 c.55.3.4 79494 2vofA 157 56.52 2afaA 425 56.96 a.102.1.3 126668 2d3dA 88 58.15 2z16A 165 58.96 3bs5B 80 61.07 1g63A 181 61.90 c.34.1.1 60299 1g94A 448 61.95 b.71.1.1,c.1.8.1 65169,65170 1bplB 294 62.14 b.71.1.1 27716 2bemA 170 62.27 b.1.18.2 116698 3c3pA 210 62.38 2b1xB 172 62.42 d.17.4.4 127677 1smd 496 62.75 1j93A 353 63.41 c.1.22.1 66454 2c9hA 444 65.11 3d2uA 281 65.15 1k3xA 262 65.47 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2io8A 619 65.85 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 1mxgA 435 67.81 b.71.1.1,c.1.8.1 85193,85194 1jyhA 157 68.79 d.60.1.3 71956 2ehhA 294 70.76 1ako 268 71.12 1qsdA 106 71.41 a.7.5.1 16335 2f6hX 419 71.65 1jhfA 202 71.86 a.4.5.2,b.87.1.1 63057,63058 1jv1A 505 72.47 c.68.1.5 71892 3cc1A 433 73.65 1yfuA 174 73.91 b.82.1.20 123094 2i53A 258 73.98 1b35C 282 74.19 3bt3A 148 74.24 1xkyA 301 74.69 c.1.10.1 122094 1ukuA 102 77.20 d.58.5.2 99533 1ja1A 622 77.38 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2zc2A 78 78.19 2avuE 192 79.61 1j7xA 302 81.46 c.14.1.2 66425 2hewF 152 82.48 b.22.1.1 136364 2gysA 419 83.78 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2g17A 337 85.67 c.2.1.3,d.81.1.1 134512,134513 2imsA 171 87.19 1gl2D 65 87.60 h.1.15.1 65281