# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.61e-05 a.60.1.2 100280 1b4fA 82 2.77e-05 a.60.1.2 17934 1b0xA 94 4.11e-05 a.60.1.2 17933 2f3nA 76 0.002836 a.60.1.2 132885 2e8oA 103 0.1972 1zjaA 557 1.719 2dh2A 424 1.796 3bs7A 78 2.620 1zruA 264 3.355 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 3bs5A 106 3.522 1k1xA 659 3.652 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 3bhcA 249 4.019 1u0jA 267 4.692 c.37.1.20 107546 2fbaA 492 5.574 a.102.1.1 133239 1y71A 130 6.950 b.34.16.1 122677 2jgoA 31 7.382 3cxjA 165 7.533 1eg3A 261 7.781 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2oszA 93 7.793 1qqfA 277 7.873 a.102.4.4 18875 1uok 558 8.128 1y9bA 90 9.852 a.43.1.9 122777 2acyA 98 10.46 d.58.10.1 39298 1cosA 31 10.55 k.4.1.1 46405 2nuwA 288 13.39 2d2sA 235 13.67 a.118.17.2 131188 1ayx 492 14.00 1uokA 558 15.99 b.71.1.1,c.1.8.1 27801,28788 3cexA 172 16.40 1yirA 408 17.10 c.1.17.2,d.41.2.2 123330,123331 1rrmA 386 17.53 e.22.1.2 105081 2rfgA 297 18.54 2bkdN 134 19.01 2ze0A 555 19.16 1wzlA 585 19.21 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2fkcA 247 19.38 1ua7A 422 19.52 b.71.1.1,c.1.8.1 107759,107760 2z3tA 425 22.77 1ztpA 251 22.82 d.86.1.2 125649 2vsfA 602 23.07 2cchB 260 23.45 a.74.1.1,a.74.1.1 130237,130238 2h21A 440 23.67 a.166.1.1,b.85.7.3 135976,135977 2npsC 81 23.78 2ev1A 222 23.88 1vljA 407 24.10 e.22.1.2 108832 1d2fA 390 24.23 c.67.1.3 34411 1j0hA 588 24.53 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2hqyA 305 25.71 2p0kA 212 27.49 1g5aA 628 28.14 b.71.1.1,c.1.8.1 65152,65153 1qsdA 106 28.34 a.7.5.1 16335 2hf9A 226 28.66 2q71A 356 29.78 1t7vA 278 32.03 b.1.1.2,d.19.1.1 112302,112303 2ibnA 250 32.93 a.211.1.4 137195 7taa 478 33.00 1aa7A 158 33.16 a.95.1.1 18741 2ysrA 105 34.02 2f6kA 307 34.84 c.1.9.15 133047 1gaiA 472 35.11 a.102.1.1 18819 2pftA 571 35.27 1wxiA 275 35.43 c.26.2.1 121400 1a8rA 221 35.49 d.96.1.1 40587 1h7cA 108 36.38 a.7.5.1 70914 2hyxA 352 37.41 3bujA 397 37.74 1s1fA 406 38.32 a.104.1.1 112008 1wa3A 205 39.41 c.1.10.1 120802 1j93A 353 40.68 c.1.22.1 66454 1keaA 221 41.44 a.96.1.2 68491 2d4cA 256 41.66 a.238.1.1 131246 1jh3A 107 41.70 d.66.1.4 71661 2vc6A 292 41.70 1ou8A 111 43.41 b.136.1.1 93543 1g63A 181 44.22 c.34.1.1 60299 1gl2D 65 46.49 h.1.15.1 65281 3pcgM 238 47.37 b.3.6.1 22742 2bemA 170 48.95 b.1.18.2 116698 1musA 477 49.71 c.55.3.4 79494 2purA 292 50.68 2nmlA 104 50.85 d.330.1.1 138371 1w2yA 229 51.82 a.204.1.1 109140 1o5kA 306 51.95 c.1.10.1 92504 1qf8A 182 52.83 g.41.4.1 45212 1p0yA 444 53.19 a.166.1.1,b.85.7.3 87654,87655 1jhdA 396 53.72 b.122.1.3,c.26.1.5 66712,66713 1w3iA 293 54.96 c.1.10.1 109152 2infA 359 55.35 2avuE 192 56.67 2vofA 157 57.84 3d2uA 281 60.91 1yfnA 118 61.45 b.136.1.1 123080 2oltA 227 61.64 2d3dA 88 61.86 1j9lA 247 61.97 c.106.1.1 62762 2qniA 219 62.18 1g94A 448 64.84 b.71.1.1,c.1.8.1 65169,65170 2d5kA 156 67.32 2bk6A 156 67.43 a.25.1.1 128660 2dbnA 461 67.51 3c3pA 210 67.81 1mv8A 436 68.71 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1bplB 294 69.14 b.71.1.1 27716 3bs5B 80 70.11 3cssA 267 70.61 1ynbA 173 70.67 a.211.1.1 123718 2vqeS 93 70.78 1yfuA 174 71.61 b.82.1.20 123094 3cc1A 433 73.60 1smd 496 73.65 1kapP 479 73.86 b.80.7.1,d.92.1.6 28012,40298 2imsA 171 74.15 1p1lA 102 74.92 d.58.5.2 87695 2ehhA 294 76.60 1gxmA 332 78.13 a.102.5.1 76371 2z16A 165 79.63 1ukuA 102 80.40 d.58.5.2 99533 1mxgA 435 80.72 b.71.1.1,c.1.8.1 85193,85194 1kq3A 376 81.41 e.22.1.2 68790 1ako 268 81.54 1jv1A 505 82.65 c.68.1.5 71892 1jhfA 202 84.01 a.4.5.2,b.87.1.1 63057,63058 2hewF 152 84.94 b.22.1.1 136364 2burB 241 85.49 b.3.6.1 129228 1sr4B 261 86.42 d.151.1.1 105949 1xkyA 301 88.37 c.1.10.1 122094 1b35C 282 88.88 3c99A 432 89.17 2ejaA 338 89.88 2f6hX 419 89.90 1jyhA 157 89.96 d.60.1.3 71956