# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b4fA 82 3.71e-05 a.60.1.2 17934 1v38A 78 4.10e-05 a.60.1.2 100280 1b0xA 94 5.26e-05 a.60.1.2 17933 2f3nA 76 0.003426 a.60.1.2 132885 2e8oA 103 0.1502 1zjaA 557 1.677 2dh2A 424 1.882 3bs7A 78 2.171 1zruA 264 2.750 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1k1xA 659 2.803 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 3bs5A 106 2.957 3bhcA 249 3.647 2jgoA 31 5.310 1u0jA 267 6.094 c.37.1.20 107546 2fbaA 492 6.654 a.102.1.1 133239 1eg3A 261 7.477 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1uok 558 7.822 2oszA 93 8.427 1y9bA 90 8.780 a.43.1.9 122777 1qqfA 277 9.314 a.102.4.4 18875 2acyA 98 10.67 d.58.10.1 39298 3cxjA 165 12.62 1rrmA 386 13.12 e.22.1.2 105081 1uokA 558 14.36 b.71.1.1,c.1.8.1 27801,28788 1cosA 31 14.88 k.4.1.1 46405 7taa 478 14.97 1ayx 492 15.51 2d2sA 235 16.48 a.118.17.2 131188 2ze0A 555 16.64 1vljA 407 17.06 e.22.1.2 108832 1d2fA 390 17.46 c.67.1.3 34411 1y71A 130 18.21 b.34.16.1 122677 1yirA 408 18.49 c.1.17.2,d.41.2.2 123330,123331 2q71A 356 18.68 1wzlA 585 19.11 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2nuwA 288 19.68 1j0hA 588 20.75 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1ua7A 422 20.80 b.71.1.1,c.1.8.1 107759,107760 2hf9A 226 21.02 1jh3A 107 22.07 d.66.1.4 71661 1g5aA 628 22.10 b.71.1.1,c.1.8.1 65152,65153 1ztpA 251 23.04 d.86.1.2 125649 2fkcA 247 23.61 2vsfA 602 25.73 2hqyA 305 26.46 2rfgA 297 26.86 2p0kA 212 27.01 2z3tA 425 29.03 1j93A 353 29.34 c.1.22.1 66454 2pftA 571 31.08 2cchB 260 31.65 a.74.1.1,a.74.1.1 130237,130238 2h21A 440 31.90 a.166.1.1,b.85.7.3 135976,135977 1aa7A 158 31.93 a.95.1.1 18741 2qniA 219 33.21 3cexA 172 34.22 2hyxA 352 34.27 2f6kA 307 34.81 c.1.9.15 133047 2ev1A 222 35.37 2bkdN 134 35.92 3d2uA 281 36.74 1a8rA 221 37.32 d.96.1.1 40587 2ibnA 250 37.76 a.211.1.4 137195 1keaA 221 39.93 a.96.1.2 68491 3bs5B 80 40.21 3pcgM 238 41.46 b.3.6.1 22742 2ysrA 105 42.43 1t7vA 278 42.91 b.1.1.2,d.19.1.1 112302,112303 2awfA 172 43.41 d.20.1.1 127432 1wa3A 205 43.97 c.1.10.1 120802 3bujA 397 45.14 2vc6A 292 45.80 1gaiA 472 46.28 a.102.1.1 18819 1wxiA 275 46.33 c.26.2.1 121400 2purA 292 46.36 1jhdA 396 47.42 b.122.1.3,c.26.1.5 66712,66713 1o5kA 306 47.79 c.1.10.1 92504 1smd 496 48.29 1qf8A 182 49.09 g.41.4.1 45212 1g63A 181 49.67 c.34.1.1 60299 1s1fA 406 50.27 a.104.1.1 112008 1h7cA 108 53.20 a.7.5.1 70914 1musA 477 53.30 c.55.3.4 79494 1kapP 479 53.49 b.80.7.1,d.92.1.6 28012,40298 1qsdA 106 53.58 a.7.5.1 16335 2bemA 170 53.71 b.1.18.2 116698 2infA 359 55.22 2avuE 192 55.51 1p0yA 444 56.73 a.166.1.1,b.85.7.3 87654,87655 1yfuA 174 57.53 b.82.1.20 123094 2d3dA 88 57.60 3cc1A 433 58.74 1j9lA 247 59.64 c.106.1.1 62762 2vqeS 93 59.99 1w2yA 229 60.06 a.204.1.1 109140 2vofA 157 61.39 1kq3A 376 61.93 e.22.1.2 68790 1yfnA 118 63.85 b.136.1.1 123080 1b35C 282 65.65 1ou8A 111 66.24 b.136.1.1 93543 2ejaA 338 68.56 1bplB 294 68.90 b.71.1.1 27716 3cssA 267 71.33 1i7kA 179 71.87 d.20.1.1 61889 2e8yA 718 72.03 2hewF 152 72.10 b.22.1.1 136364 2ehhA 294 72.16 2z16A 165 72.19 3c3pA 210 73.16 2npsC 81 74.67 1w3iA 293 76.52 c.1.10.1 109152 2g17A 337 76.72 c.2.1.3,d.81.1.1 134512,134513 1jhfA 202 77.28 a.4.5.2,b.87.1.1 63057,63058 1ako 268 77.42 1mxgA 435 77.65 b.71.1.1,c.1.8.1 85193,85194 1g94A 448 77.96 b.71.1.1,c.1.8.1 65169,65170 1k3iA 656 78.37 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2d4cA 256 81.33 a.238.1.1 131246 1xkyA 301 81.39 c.1.10.1 122094 1sr4B 261 82.06 d.151.1.1 105949 2e01A 457 83.06 2nmlA 104 83.29 d.330.1.1 138371 2burB 241 84.03 b.3.6.1 129228 3ceyA 474 84.60 1sfnA 246 85.33 b.82.1.11 105496 2dbnA 461 86.34 1mvlA 209 86.59 c.34.1.1 85146 2guyA 478 86.66 b.71.1.1,c.1.8.1 135754,135755 2q4kA 251 87.26 d.86.1.2 139864 1uwkA 557 88.50 e.51.1.1 108065 1cunA 213 88.60 a.7.1.1,a.7.1.1 16313,16314 2oltA 227 89.10 2r47A 157 89.57