# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 1.63e-06 a.60.1.2 100280 1b4fA 82 2.77e-06 a.60.1.2 17934 1b0xA 94 6.69e-06 a.60.1.2 17933 2f3nA 76 6.92e-05 a.60.1.2 132885 2e8oA 103 0.01014 3bs7A 78 0.1846 3bs5A 106 0.5235 3bs5B 80 1.224 2oszA 93 3.242 3bhcA 249 3.750 3cxjA 165 4.024 1rrmA 386 5.727 e.22.1.2 105081 2awfA 172 8.409 d.20.1.1 127432 2iqcA 210 8.637 2h6fB 437 8.676 a.102.4.3 136186 1u0jA 267 8.696 c.37.1.20 107546 1eg3A 261 9.006 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 3cc1A 433 9.903 1g63A 181 10.20 c.34.1.1 60299 2d3dA 88 11.44 3c9gA 142 12.59 1s2dA 167 12.72 c.23.14.1 98377 2zdiC 151 12.76 1smd 496 13.56 1gai 472 14.04 2avuE 192 15.21 1mvlA 209 16.68 c.34.1.1 85146 1p0yA 444 17.64 a.166.1.1,b.85.7.3 87654,87655 2z16A 165 17.71 2afaA 425 18.61 a.102.1.3 126668 2jgoA 31 18.69 2h21A 440 18.96 a.166.1.1,b.85.7.3 135976,135977 2fbaA 492 18.98 a.102.1.1 133239 1ayx 492 19.66 2cchB 260 21.17 a.74.1.1,a.74.1.1 130237,130238 2dbnA 461 23.28 1cunA 213 24.46 a.7.1.1,a.7.1.1 16313,16314 2ev1A 222 24.96 1zjaA 557 26.12 2rfgA 297 27.26 2acyA 98 27.87 d.58.10.1 39298 2z3tA 425 28.43 1x91A 153 29.57 a.29.6.1 114975 2fkcA 247 29.82 1a0iA 348 30.20 b.40.4.6,d.142.2.1 25363,41577 1h7cA 108 32.77 a.7.5.1 70914 1aa7A 158 35.13 a.95.1.1 18741 3dczA 207 35.53 1trbA 320 36.99 c.3.1.5,c.3.1.5 30529,30530 2vqeS 93 37.23 2purA 292 37.47 2f6kA 307 38.46 c.1.9.15 133047 1dceA 567 38.79 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 2cvjA 180 39.24 1ztpA 251 39.68 d.86.1.2 125649 2bnlA 136 42.82 2ehhA 294 43.87 2ou5A 175 44.62 1xszA 356 45.19 a.118.3.1,d.129.9.1 116005,116006 2ibnA 250 46.02 a.211.1.4 137195 1qqfA 277 46.33 a.102.4.4 18875 2d2sA 235 47.55 a.118.17.2 131188 1s1fA 406 47.69 a.104.1.1 112008 2i51A 195 48.16 2nuwA 288 48.42 1bl0A 129 48.88 a.4.1.8,a.4.1.8 16053,16054 1z3xA 238 49.04 a.118.1.22,a.261.1.1 124416,124417 1pq1A 196 49.16 f.1.4.1 94986 1t0bA 252 49.76 c.23.16.6 106199 1ou8A 111 50.20 b.136.1.1 93543 2p32A 120 50.61 2ysrA 105 52.46 1yfnA 118 54.60 b.136.1.1 123080 1keaA 221 55.01 a.96.1.2 68491 1udcA 338 55.13 c.2.1.2 29785 1vljA 407 55.26 e.22.1.2 108832 2iu5A 195 55.49 2vg0A 227 55.59 1uok 558 55.87 2qniA 219 56.97 1jaeA 471 57.45 b.71.1.1,c.1.8.1 27773,28760 3ceyA 474 60.58 1fr2A 86 61.67 a.28.2.1 83256 1g94A 448 62.93 b.71.1.1,c.1.8.1 65169,65170 1zrrA 179 63.50 b.82.1.6 125555 1t3kA 152 64.44 c.46.1.1 106357 1zbfA 142 64.90 c.55.3.1 124850 1o5kA 306 65.31 c.1.10.1 92504 2csgA 424 67.86 b.82.2.12 130768 1nhsA 447 68.20 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1n4qB 377 69.47 a.102.4.3 91636 1j0hA 588 69.75 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2atsA 292 70.02 c.1.10.1 127306 1gaiA 472 70.46 a.102.1.1 18819 2p0kA 212 72.64 1qsdA 106 73.69 a.7.5.1 16335 3c3pA 210 73.95 1wa3A 205 74.32 c.1.10.1 120802 2vsfA 602 74.50 1fl2A 310 74.63 c.3.1.5,c.3.1.5 59869,59870 1f5qB 252 75.80 a.74.1.1,a.74.1.1 18362,18363 2bh1A 250 79.64 c.55.1.11,c.55.1.11 128506,128507 2vvrA 149 80.44 1hl2A 297 80.46 c.1.10.1 83581 1kq3A 376 80.50 e.22.1.2 68790 3d0cA 314 81.12 1tyhA 248 83.03 a.132.1.3 107458 1w3iA 293 83.08 c.1.10.1 109152 2dh2A 424 83.28 1knwA 425 84.07 b.49.2.3,c.1.6.1 90969,90970 2d9iA 96 84.14 1jyhA 157 85.47 d.60.1.3 71956 1u4qA 322 85.72 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 1gwiA 411 85.75 a.104.1.1 76364 2bkdN 134 87.15 1ej6D 418 87.30 i.7.1.1 45970 1nhpA 447 87.89 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1qf8A 182 88.13 g.41.4.1 45212 2amxA 376 88.57 c.1.9.1 127024 1y71A 130 89.92 b.34.16.1 122677