# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.75e-05 a.60.1.2 100280 1b4fA 82 4.20e-05 a.60.1.2 17934 1b0xA 94 5.34e-05 a.60.1.2 17933 2f3nA 76 0.001321 a.60.1.2 132885 2e8oA 103 0.1308 1zjaA 557 1.218 2dh2A 424 1.527 3bs7A 78 2.844 2fbaA 492 2.899 a.102.1.1 133239 2jgoA 31 4.519 1uok 558 4.697 1ayx 492 5.252 2d2sA 235 5.819 a.118.17.2 131188 1k1xA 659 6.944 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 3bs5A 106 7.812 2oszA 93 7.979 1uokA 558 8.003 b.71.1.1,c.1.8.1 27801,28788 1g5aA 628 8.062 b.71.1.1,c.1.8.1 65152,65153 1y9bA 90 8.116 a.43.1.9 122777 3bhcA 249 8.751 1u0jA 267 8.904 c.37.1.20 107546 3cxjA 165 9.017 2npsC 81 9.218 1eg3A 261 9.231 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1wzlA 585 10.38 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1cosA 31 10.89 k.4.1.1 46405 2cchB 260 11.40 a.74.1.1,a.74.1.1 130237,130238 1gxmA 332 11.49 a.102.5.1 76371 2ze0A 555 13.21 2afaA 425 13.33 a.102.1.3 126668 1zruA 264 14.54 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 3bujA 397 14.75 1rrmA 386 15.65 e.22.1.2 105081 1ztpA 251 16.11 d.86.1.2 125649 1y71A 130 17.03 b.34.16.1 122677 2vofA 157 17.36 1smd 496 19.37 2d3dA 88 19.81 1vljA 407 19.88 e.22.1.2 108832 2fkcA 247 22.73 1qqfA 277 22.73 a.102.4.4 18875 7taa 478 24.80 2acyA 98 25.22 d.58.10.1 39298 1h7cA 108 25.73 a.7.5.1 70914 2dbnA 461 26.07 2h21A 440 26.63 a.166.1.1,b.85.7.3 135976,135977 1j0hA 588 27.25 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2hqyA 305 28.04 2awfA 172 28.75 d.20.1.1 127432 1gaiA 472 30.36 a.102.1.1 18819 2vqeS 93 30.42 2qniA 219 30.74 1d2fA 390 31.09 c.67.1.3 34411 1ua7A 422 32.99 b.71.1.1,c.1.8.1 107759,107760 1yfnA 118 33.52 b.136.1.1 123080 2ev1A 222 33.82 2nuwA 288 34.50 1s1fA 406 35.11 a.104.1.1 112008 1yfuA 174 35.86 b.82.1.20 123094 1edgA 380 36.01 c.1.8.3 28807 2bkdN 134 38.03 2jgzB 260 38.25 2f6kA 307 38.57 c.1.9.15 133047 2i53A 258 39.41 1yirA 408 39.60 c.1.17.2,d.41.2.2 123330,123331 2ibnA 250 40.17 a.211.1.4 137195 1qsdA 106 40.74 a.7.5.1 16335 2rfgA 297 41.54 1i7kA 179 43.08 d.20.1.1 61889 1keaA 221 43.62 a.96.1.2 68491 2bemA 170 43.75 b.1.18.2 116698 1ukuA 102 43.75 d.58.5.2 99533 1xszA 356 43.83 a.118.3.1,d.129.9.1 116005,116006 1wxiA 275 44.31 c.26.2.1 121400 2b1xB 172 45.22 d.17.4.4 127677 1w98B 283 46.20 1ou8A 111 48.03 b.136.1.1 93543 1jhdA 396 48.49 b.122.1.3,c.26.1.5 66712,66713 2e8yA 718 49.76 1g63A 181 50.85 c.34.1.1 60299 2e01A 457 51.60 1qf8A 182 52.00 g.41.4.1 45212 1p1lA 102 52.00 d.58.5.2 87695 2f6hX 419 52.32 1t7vA 278 52.41 b.1.1.2,d.19.1.1 112302,112303 2bs2A 660 53.54 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2vrqA 496 54.08 2ownA 262 54.73 1gwiA 411 55.51 a.104.1.1 76364 2r47A 157 57.48 2zbwA 335 58.13 2iagA 482 58.50 1zo4A 473 59.18 2cvjA 180 59.23 2csgA 424 59.45 b.82.2.12 130768 1gai 472 62.41 3c3pA 210 63.75 2pftA 571 63.99 1jv1A 505 65.77 c.68.1.5 71892 2d4cA 256 66.41 a.238.1.1 131246 2ovrB 445 68.74 1v77A 212 69.14 c.6.3.2 108402 3d2uA 281 70.56 1cunA 213 70.63 a.7.1.1,a.7.1.1 16313,16314 1gjwA 637 71.45 b.71.1.1,c.1.8.1 60582,60583 1p0yA 444 71.54 a.166.1.1,b.85.7.3 87654,87655 2hyxA 352 75.57 3cc1A 433 75.88 1b35C 282 75.95 1dmhA 311 76.17 b.3.6.1 22633 1bplB 294 76.20 b.71.1.1 27716 1aa7A 158 76.28 a.95.1.1 18741 2dxaA 166 76.35 1f74A 293 78.44 c.1.10.1 29079 2qo3A 915 78.77 2ij2A 470 79.48 a.104.1.1 137449 1zbfA 142 81.56 c.55.3.1 124850 1wa3A 205 83.79 c.1.10.1 120802 3ceyA 474 84.44 2r6fA 972 85.57 1j7xA 302 85.65 c.14.1.2 66425 2bnlA 136 87.23 2p0kA 212 87.43 2d5kA 156 88.29 1kr4A 125 89.51 d.58.5.2 72889