# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 0.01604 a.60.1.2 100280 1b4fA 82 0.01889 a.60.1.2 17934 1b0xA 94 0.02146 a.60.1.2 17933 2f3nA 76 0.2135 a.60.1.2 132885 1y5iA 1246 0.9751 b.52.2.2,c.81.1.1 122639,122640 2r6fA 972 1.105 2qubA 615 1.222 2e8oA 103 4.001 2dh2A 424 4.582 1lnsA 763 5.027 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1tg7A 971 5.343 b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14 112418,112419,112420,112421,112422 1j0hA 588 6.158 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1ja1A 622 6.323 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1or0B 528 7.325 1a9xB 379 8.971 c.8.3.1,c.23.16.1 30732,31409 1v0eA 666 10.90 b.68.1.2,b.108.1.3 113466,113467 1t1uA 639 11.12 c.43.1.3,c.43.1.3 119110,119111 3c68A 761 12.52 1zruA 264 12.81 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1wkyA 464 12.99 b.18.1.31,c.1.8.3 120992,120993 3bgaA 1010 13.88 2qt6A 498 13.93 1k1xA 659 14.40 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1a8rA 221 14.46 d.96.1.1 40587 1rrmA 386 15.68 e.22.1.2 105081 3clqA 421 17.31 1zcjA 463 19.16 1vlpA 441 20.32 d.41.2.2,c.1.17.2 108840,108841 1jhnA 424 20.97 b.104.1.1,b.29.1.12 66722,70060 1k3iA 656 21.41 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2bs2A 660 21.82 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1ru3A 732 27.72 e.26.1.3 97835 1pg4A 652 28.40 e.23.1.1 88067 2vw2A 697 29.07 1ybeA 449 29.79 c.1.17.2,d.41.2.2 116605,116606 2z8gA 549 30.02 2oegA 505 30.48 1ju2A 536 30.78 c.3.1.2,d.16.1.1 77169,77170 3bs7A 78 31.68 1o59A 355 33.48 b.18.1.22,b.18.1.22 92495,92496 3bujA 397 35.49 3b98A 475 36.71 3c2uA 538 38.12 1g63A 181 38.60 c.34.1.1 60299 1h16A 759 40.55 c.7.1.1 76462 3gcbA 470 44.93 d.3.1.1 37032 2jgoA 31 45.52 2grvA 621 46.46 1e4cP 215 46.89 c.74.1.1 34969 2pmvA 399 47.39 3cox 507 47.84 2r47A 157 47.93 2sliA 679 47.98 b.29.1.9,b.68.1.1 24274,27611 1sjiA 350 50.66 1txvA 452 50.70 b.69.8.1 112783 1mswD 883 50.94 e.8.1.3 79427 1bplB 294 51.45 b.71.1.1 27716 3d1cA 369 51.73 1qwyA 291 52.86 b.84.3.2 96509 1mwvA 714 53.26 a.93.1.3,a.93.1.3 85161,85162 1y9bA 90 53.88 a.43.1.9 122777 3bhcA 249 54.14 1yirA 408 54.89 c.1.17.2,d.41.2.2 123330,123331 2d2sA 235 55.03 a.118.17.2 131188 1ohvA 472 55.03 c.67.1.4 93031 2ogwA 310 55.05 2z3zA 706 57.77 1smd 496 57.92 1vg0A 650 58.60 c.3.1.3,d.16.1.6 108596,108597 3cxjA 165 58.77 1vljA 407 60.53 e.22.1.2 108832 2obeA 932 61.19 3bs5A 106 61.63 2qx2A 344 62.42 1w99A 558 62.67 1tqnA 486 64.38 a.104.1.1 107238 2oszA 93 64.51 1zjaA 557 67.90 1u0jA 267 69.19 c.37.1.20 107546 1w2yA 229 74.46 a.204.1.1 109140 2bb6A 414 75.84 1lp3A 519 76.44 b.121.5.2 74169 1jhdA 396 76.89 b.122.1.3,c.26.1.5 66712,66713 2p0kA 212 77.43 2v3zA 440 78.10 2c0hA 353 78.74 c.1.8.3 129594 2hu5A 582 79.50 b.69.7.2,c.69.1.33 136763,136764 2hf9A 226 81.19 2bemA 170 82.04 b.1.18.2 116698 2q4eA 362 83.10 2p3rA 510 83.62 c.55.1.4,c.55.1.4 139471,139472 1cosA 31 86.02 k.4.1.1 46405 1uwkA 557 86.85 e.51.1.1 108065 2z0qA 346 87.62 1rgyA 360 88.08 e.3.1.1 97456 1zghA 260 88.35 b.46.1.1,c.65.1.1 125028,125029 2r85A 334 88.69 1rgzA 363 89.43 e.3.1.1 97457