# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 3.15e-05 a.60.1.2 100280 1b4fA 82 4.18e-05 a.60.1.2 17934 1b0xA 94 5.00e-05 a.60.1.2 17933 2f3nA 76 0.001782 a.60.1.2 132885 2e8oA 103 0.1802 2dh2A 424 1.122 1zjaA 557 1.574 2fbaA 492 3.005 a.102.1.1 133239 3bs7A 78 3.411 2jgoA 31 4.075 3bhcA 249 4.629 1y9bA 90 5.358 a.43.1.9 122777 1ayx 492 5.522 2d2sA 235 5.745 a.118.17.2 131188 1uok 558 5.842 3cxjA 165 6.715 1g5aA 628 7.807 b.71.1.1,c.1.8.1 65152,65153 1eg3A 261 8.176 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1uokA 558 8.331 b.71.1.1,c.1.8.1 27801,28788 2oszA 93 8.886 3bs5A 106 8.964 1u0jA 267 9.166 c.37.1.20 107546 1k1xA 659 9.548 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1wzlA 585 9.684 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2awfA 172 10.75 d.20.1.1 127432 1cosA 31 10.83 k.4.1.1 46405 2vofA 157 11.27 2npsC 81 11.47 2cchB 260 11.66 a.74.1.1,a.74.1.1 130237,130238 3bujA 397 12.03 1zruA 264 13.31 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2afaA 425 14.44 a.102.1.3 126668 1gxmA 332 16.31 a.102.5.1 76371 1y71A 130 17.41 b.34.16.1 122677 2ze0A 555 18.07 1j0hA 588 18.08 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1ztpA 251 18.65 d.86.1.2 125649 1i7kA 179 19.08 d.20.1.1 61889 1smd 496 22.19 2h21A 440 24.06 a.166.1.1,b.85.7.3 135976,135977 1h7cA 108 24.66 a.7.5.1 70914 1s1fA 406 24.70 a.104.1.1 112008 2fkcA 247 25.34 2qniA 219 26.73 1edgA 380 26.96 c.1.8.3 28807 1yirA 408 27.35 c.1.17.2,d.41.2.2 123330,123331 2e8yA 718 27.63 1rrmA 386 31.52 e.22.1.2 105081 2ev1A 222 31.85 2nuwA 288 32.11 2dbnA 461 32.14 2d3dA 88 32.21 2acyA 98 32.30 d.58.10.1 39298 1ua7A 422 32.37 b.71.1.1,c.1.8.1 107759,107760 2bemA 170 34.29 b.1.18.2 116698 7taa 478 35.01 1yfuA 174 35.01 b.82.1.20 123094 2hqyA 305 35.03 1gwiA 411 35.13 a.104.1.1 76364 2ibnA 250 35.82 a.211.1.4 137195 1yfnA 118 36.97 b.136.1.1 123080 1keaA 221 37.87 a.96.1.2 68491 1b35C 282 37.96 2jgzB 260 38.45 2b1xB 172 38.85 d.17.4.4 127677 1qf8A 182 40.09 g.41.4.1 45212 2i53A 258 40.82 1gaiA 472 41.26 a.102.1.1 18819 2vrqA 496 41.51 1wxiA 275 42.24 c.26.2.1 121400 1qqfA 277 42.67 a.102.4.4 18875 2bkdN 134 45.08 2nmlA 104 45.84 d.330.1.1 138371 2vqeS 93 47.44 2q71A 356 47.55 2f6kA 307 47.86 c.1.9.15 133047 1g63A 181 48.06 c.34.1.1 60299 1w98B 283 48.59 1d2fA 390 50.17 c.67.1.3 34411 2d4cA 256 54.54 a.238.1.1 131246 2pftA 571 55.17 1t7vA 278 55.35 b.1.1.2,d.19.1.1 112302,112303 2hyxA 352 55.39 2csgA 424 55.47 b.82.2.12 130768 1vljA 407 57.68 e.22.1.2 108832 1ukuA 102 58.73 d.58.5.2 99533 1t2bA 397 58.74 1jhdA 396 60.00 b.122.1.3,c.26.1.5 66712,66713 1ou8A 111 60.45 b.136.1.1 93543 1w2yA 229 62.21 a.204.1.1 109140 1jv1A 505 63.40 c.68.1.5 71892 1p0yA 444 64.01 a.166.1.1,b.85.7.3 87654,87655 1xszA 356 64.81 a.118.3.1,d.129.9.1 116005,116006 1jhfA 202 64.97 a.4.5.2,b.87.1.1 63057,63058 3ceyA 474 66.50 2rfgA 297 66.68 3d2uA 281 67.10 1zo4A 473 68.27 2iagA 482 68.80 2f6hX 419 69.51 2avuE 192 69.94 2e01A 457 70.73 3c3pA 210 71.22 2a4dA 160 71.91 d.20.1.1 126152 1qsdA 106 71.94 a.7.5.1 16335 2p0kA 212 73.00 2r47A 157 73.12 2fo3A 125 75.22 d.20.1.1 133868 1gai 472 75.54 1uarA 285 76.89 c.46.1.2,c.46.1.2 107762,107763 1aa7A 158 77.02 a.95.1.1 18741 1w8xM 83 77.07 i.6.1.1 114390 1v77A 212 77.57 c.6.3.2 108402 2ij2A 470 78.17 a.104.1.1 137449 2ownA 262 78.44 1a8rA 221 78.59 d.96.1.1 40587 2cvjA 180 78.62 1kxuA 333 79.55 a.74.1.1,a.74.1.1 18358,18359 1cunA 213 81.07 a.7.1.1,a.7.1.1 16313,16314 3cc1A 433 81.20 2bnlA 136 81.61 2vsfA 602 84.45 1v8dA 235 84.53 c.140.1.1 108425 2zc2A 78 85.17 1rhs 296 86.15 2ysrA 105 87.43 1g6uA 48 87.74 k.9.1.1 46425 1bplB 294 88.04 b.71.1.1 27716