# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b4fA 82 4.74e-05 a.60.1.2 17934 1v38A 78 5.14e-05 a.60.1.2 100280 1b0xA 94 7.58e-05 a.60.1.2 17933 2f3nA 76 0.007459 a.60.1.2 132885 2e8oA 103 0.1460 1k3iA 656 1.888 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3bs7A 78 2.350 1zjaA 557 2.411 1k1xA 659 3.761 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2dh2A 424 4.665 1zruA 264 4.786 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 3bs5A 106 5.016 1qqfA 277 7.353 a.102.4.4 18875 1uok 558 8.225 2fbaA 492 9.96 a.102.1.1 133239 1gaiA 472 10.49 a.102.1.1 18819 1eg3A 261 10.74 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2oszA 93 11.14 1y71A 130 11.38 b.34.16.1 122677 2hqyA 305 11.96 1ztpA 251 12.50 d.86.1.2 125649 2jgoA 31 13.49 2ze0A 555 13.88 1uokA 558 15.01 b.71.1.1,c.1.8.1 27801,28788 1y9bA 90 15.54 a.43.1.9 122777 1g5aA 628 17.33 b.71.1.1,c.1.8.1 65152,65153 7taa 478 17.50 1ayx 492 20.27 1u0jA 267 20.91 c.37.1.20 107546 3cxjA 165 21.82 2cchB 260 21.86 a.74.1.1,a.74.1.1 130237,130238 2f6kA 307 22.52 c.1.9.15 133047 2acyA 98 23.18 d.58.10.1 39298 1g63A 181 23.47 c.34.1.1 60299 2ovrB 445 23.73 2ibnA 250 24.03 a.211.1.4 137195 1a8rA 221 24.28 d.96.1.1 40587 1yirA 408 25.56 c.1.17.2,d.41.2.2 123330,123331 2qniA 219 25.79 2d2sA 235 25.80 a.118.17.2 131188 1kapP 479 26.59 b.80.7.1,d.92.1.6 28012,40298 1jh3A 107 26.81 d.66.1.4 71661 2avuE 192 27.25 1cosA 31 27.53 k.4.1.1 46405 3cexA 172 28.40 1gxmA 332 32.76 a.102.5.1 76371 1mv8A 436 32.78 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dmhA 311 33.06 b.3.6.1 22633 1jhdA 396 33.33 b.122.1.3,c.26.1.5 66712,66713 1t7vA 278 33.84 b.1.1.2,d.19.1.1 112302,112303 2bkdN 134 36.32 3cc1A 433 37.69 3bhcA 249 38.13 2fiyA 309 38.52 e.59.1.1 133540 2hyxA 352 39.91 2hf9A 226 40.16 1ua7A 422 40.86 b.71.1.1,c.1.8.1 107759,107760 2npsC 81 41.34 2i53A 258 42.11 2z3tA 425 44.57 2d3dA 88 44.86 2fkcA 247 45.09 1j7xA 302 47.18 c.14.1.2 66425 1rrmA 386 47.82 e.22.1.2 105081 1uwkA 557 52.31 e.51.1.1 108065 2afaA 425 52.48 a.102.1.3 126668 1keaA 221 52.95 a.96.1.2 68491 1smd 496 53.47 1qsdA 106 54.01 a.7.5.1 16335 1edgA 380 55.06 c.1.8.3 28807 1wzlA 585 55.44 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2vofA 157 55.61 2g17A 337 56.12 c.2.1.3,d.81.1.1 134512,134513 2p0kA 212 56.93 1b35C 282 57.00 3cssA 267 57.16 2iagA 482 57.91 2pftA 571 58.26 2b1xB 172 58.52 d.17.4.4 127677 1h7cA 108 58.66 a.7.5.1 70914 2dbnA 461 60.29 1w98B 283 60.29 1aa7A 158 60.34 a.95.1.1 18741 1ntyA 311 61.05 a.87.1.1,b.55.1.1 103873,103874 3bujA 397 62.55 1w2yA 229 62.78 a.204.1.1 109140 3bs5B 80 66.42 2ysrA 105 67.25 2nuwA 288 69.86 1g94A 448 69.99 b.71.1.1,c.1.8.1 65169,65170 2vqeS 93 70.10 1dkzA 219 70.17 a.8.4.1,b.130.1.1 90345,90346 1p1lA 102 70.48 d.58.5.2 87695 1j9lA 247 71.97 c.106.1.1 62762 1mxgA 435 72.28 b.71.1.1,c.1.8.1 85193,85194 2bemA 170 73.13 b.1.18.2 116698 2rfgA 297 74.97 2jgzB 260 75.62 1j0hA 588 75.70 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1vljA 407 76.31 e.22.1.2 108832 1sr4B 261 76.78 d.151.1.1 105949 1u00A 227 78.20 a.8.4.1,b.130.1.1 112900,112901 1a0pA 290 80.02 a.60.9.1,d.163.1.1 18105,42165 3ceyA 474 80.03 1pwgA 349 80.22 e.3.1.1 104340 2e4tA 519 81.44 1s1fA 406 82.22 a.104.1.1 112008 1ukuA 102 82.94 d.58.5.2 99533 1m6yA 301 86.39 a.60.13.1,c.66.1.23 78716,78717 1xszA 356 87.20 a.118.3.1,d.129.9.1 116005,116006 1v77A 212 87.41 c.6.3.2 108402 2h21A 440 87.80 a.166.1.1,b.85.7.3 135976,135977 2r47A 157 87.84