# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 2.63e-05 a.60.1.2 100280 1b4fA 82 2.82e-05 a.60.1.2 17934 1b0xA 94 5.77e-05 a.60.1.2 17933 2f3nA 76 0.003389 a.60.1.2 132885 2e8oA 103 0.1873 1zjaA 557 0.4806 2dh2A 424 1.466 3bhcA 249 1.740 3bs7A 78 2.953 3cxjA 165 3.959 2fbaA 492 5.002 a.102.1.1 133239 1y71A 130 5.104 b.34.16.1 122677 2oszA 93 5.458 1y9bA 90 5.746 a.43.1.9 122777 2jgoA 31 5.811 1gaiA 472 6.651 a.102.1.1 18819 1ayx 492 7.138 1k1xA 659 7.210 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1zruA 264 7.547 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 1u0jA 267 7.550 c.37.1.20 107546 3bs5A 106 8.847 2d2sA 235 9.195 a.118.17.2 131188 1ztpA 251 10.90 d.86.1.2 125649 1gxmA 332 10.92 a.102.5.1 76371 2cchB 260 12.93 a.74.1.1,a.74.1.1 130237,130238 1cosA 31 12.97 k.4.1.1 46405 2ze0A 555 13.96 2h21A 440 14.05 a.166.1.1,b.85.7.3 135976,135977 1uok 558 15.00 2acyA 98 15.37 d.58.10.1 39298 1wzlA 585 15.57 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1uokA 558 16.40 b.71.1.1,c.1.8.1 27801,28788 1smd 496 16.66 3cc1A 433 17.73 1keaA 221 18.79 a.96.1.2 68491 1eg3A 261 19.89 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1bplB 294 20.38 b.71.1.1 27716 7taa 478 20.90 1j9lA 247 20.92 c.106.1.1 62762 1i7kA 179 21.04 d.20.1.1 61889 2ev1A 222 21.33 2f6kA 307 22.52 c.1.9.15 133047 2p0kA 212 22.81 1qqfA 277 23.94 a.102.4.4 18875 1gai 472 24.26 2q4kA 251 26.23 d.86.1.2 139864 2pftA 571 26.63 2i53A 258 27.35 2hqyA 305 27.70 1jyhA 157 27.80 d.60.1.3 71956 2fkcA 247 27.81 2nuwA 288 28.34 1dmhA 311 28.74 b.3.6.1 22633 2avuE 192 29.02 2ownA 262 29.15 2hyxA 352 29.42 2awfA 172 30.67 d.20.1.1 127432 1jaeA 471 30.70 b.71.1.1,c.1.8.1 27773,28760 2ibnA 250 30.95 a.211.1.4 137195 1ua7A 422 31.07 b.71.1.1,c.1.8.1 107759,107760 1s1fA 406 31.51 a.104.1.1 112008 1g63A 181 31.86 c.34.1.1 60299 1j0hA 588 32.27 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2rfgA 297 32.35 2bnlA 136 32.85 2b1xB 172 33.43 d.17.4.4 127677 1g5aA 628 33.64 b.71.1.1,c.1.8.1 65152,65153 2npsC 81 34.25 1hx0A 496 35.16 b.71.1.1,c.1.8.1 61346,61347 1g94A 448 36.59 b.71.1.1,c.1.8.1 65169,65170 1wxiA 275 37.89 c.26.2.1 121400 2vsfA 602 39.51 1h7cA 108 41.32 a.7.5.1 70914 2jgzB 260 43.99 2vqeS 93 43.99 2zc2A 78 44.01 2afaA 425 44.30 a.102.1.3 126668 1jhdA 396 44.91 b.122.1.3,c.26.1.5 66712,66713 2hewF 152 45.71 b.22.1.1 136364 1j7xA 302 46.84 c.14.1.2 66425 1qsdA 106 47.86 a.7.5.1 16335 1gjwA 637 49.83 b.71.1.1,c.1.8.1 60582,60583 2d3dA 88 50.34 1ou8A 111 50.37 b.136.1.1 93543 1ei5A 520 50.81 b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1aa7A 158 50.88 a.95.1.1 18741 1p0yA 444 50.90 a.166.1.1,b.85.7.3 87654,87655 2e6cA 244 51.09 1rrmA 386 51.72 e.22.1.2 105081 3cexA 172 52.29 2nmlA 104 52.48 d.330.1.1 138371 3ck6A 252 52.56 1yfuA 174 52.76 b.82.1.20 123094 1w98B 283 52.94 2vofA 157 53.67 1d2fA 390 55.55 c.67.1.3 34411 3ceyA 474 55.59 1jv1A 505 57.55 c.68.1.5 71892 2r47A 157 57.98 1yfnA 118 59.63 b.136.1.1 123080 3c3pA 210 62.75 3bs5B 80 62.84 1uarA 285 63.29 c.46.1.2,c.46.1.2 107762,107763 1iv8A 720 65.68 b.71.1.1,c.1.8.1 76842,76843 1ako 268 67.92 1j93A 353 69.29 c.1.22.1 66454 1v77A 212 73.01 c.6.3.2 108402 2a4dA 160 73.28 d.20.1.1 126152 1wa3A 205 74.19 c.1.10.1 120802 1mv8A 436 75.29 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2r55A 231 77.47 3bujA 397 77.56 2ehhA 294 77.68 2boyA 254 77.72 3d0cA 314 79.04 2guyA 478 79.74 b.71.1.1,c.1.8.1 135754,135755 2ovrB 445 79.84 2p32A 120 81.22 1t7vA 278 83.22 b.1.1.2,d.19.1.1 112302,112303 1uliB 187 84.48 d.17.4.4 107923 2f6hX 419 85.38 2purA 292 85.45 1rhs 296 85.90 2io8A 619 86.30 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 3dhpA 496 86.60 1e0cA 271 88.85 c.46.1.2,c.46.1.2 32717,32718 1o5kA 306 89.37 c.1.10.1 92504