# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b4fA 82 2.88e-05 a.60.1.2 17934 1v38A 78 3.48e-05 a.60.1.2 100280 1b0xA 94 6.55e-05 a.60.1.2 17933 2f3nA 76 0.004608 a.60.1.2 132885 2e8oA 103 0.1066 1zjaA 557 0.9769 1k1xA 659 2.307 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 3bs7A 78 2.743 1zruA 264 3.780 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2dh2A 424 5.111 1y71A 130 5.136 b.34.16.1 122677 3bs5A 106 6.325 1eg3A 261 7.040 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2fbaA 492 7.218 a.102.1.1 133239 2oszA 93 8.965 3bhcA 249 9.199 1y9bA 90 9.408 a.43.1.9 122777 2jgoA 31 9.616 2acyA 98 9.626 d.58.10.1 39298 1ua7A 422 10.74 b.71.1.1,c.1.8.1 107759,107760 3cxjA 165 10.94 1u0jA 267 11.72 c.37.1.20 107546 1ztpA 251 11.84 d.86.1.2 125649 1ayx 492 13.27 7taa 478 13.67 1k3iA 656 13.88 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1qqfA 277 14.03 a.102.4.4 18875 1smd 496 14.27 2cchB 260 14.33 a.74.1.1,a.74.1.1 130237,130238 1jh3A 107 14.34 d.66.1.4 71661 1uok 558 14.64 2qniA 219 16.46 2d2sA 235 16.67 a.118.17.2 131188 1wzlA 585 16.75 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2hqyA 305 17.04 1gaiA 472 18.80 a.102.1.1 18819 1t7vA 278 19.76 b.1.1.2,d.19.1.1 112302,112303 1cosA 31 20.04 k.4.1.1 46405 2ze0A 555 21.56 2fkcA 247 23.28 1uokA 558 24.40 b.71.1.1,c.1.8.1 27801,28788 1yirA 408 25.71 c.1.17.2,d.41.2.2 123330,123331 1jhdA 396 26.00 b.122.1.3,c.26.1.5 66712,66713 2npsC 81 26.62 2bkdN 134 27.33 1g5aA 628 29.92 b.71.1.1,c.1.8.1 65152,65153 1g63A 181 30.25 c.34.1.1 60299 2f6kA 307 30.34 c.1.9.15 133047 1keaA 221 32.64 a.96.1.2 68491 2ovrB 445 35.16 3cc1A 433 35.92 2i53A 258 36.34 2p0kA 212 37.19 1p1lA 102 39.21 d.58.5.2 87695 2ibnA 250 39.70 a.211.1.4 137195 2afaA 425 40.74 a.102.1.3 126668 1dmhA 311 41.17 b.3.6.1 22633 2z3tA 425 41.27 3cssA 267 41.61 1ukuA 102 42.57 d.58.5.2 99533 1rrmA 386 42.93 e.22.1.2 105081 2pftA 571 43.17 2b1xB 172 44.27 d.17.4.4 127677 2nuwA 288 44.48 1bplB 294 44.50 b.71.1.1 27716 1g94A 448 44.97 b.71.1.1,c.1.8.1 65169,65170 2h21A 440 45.37 a.166.1.1,b.85.7.3 135976,135977 2d3dA 88 45.64 1gxmA 332 46.68 a.102.5.1 76371 1d2fA 390 47.94 c.67.1.3 34411 1j7xA 302 48.55 c.14.1.2 66425 1h7cA 108 49.18 a.7.5.1 70914 2io8A 619 49.78 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 1aa7A 158 53.19 a.95.1.1 18741 2rfgA 297 53.64 2q4kA 251 53.98 d.86.1.2 139864 3ceyA 474 54.31 1s1fA 406 54.57 a.104.1.1 112008 1b35C 282 54.87 3c99A 432 56.55 1jaeA 471 56.66 b.71.1.1,c.1.8.1 27773,28760 1qsdA 106 56.74 a.7.5.1 16335 1kr4A 125 57.21 d.58.5.2 72889 1mv8A 436 57.36 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 3bujA 397 57.60 1j9lA 247 58.18 c.106.1.1 62762 1a8rA 221 58.92 d.96.1.1 40587 2vqeS 93 59.05 3bs5B 80 59.66 1sfnA 246 60.31 b.82.1.11 105496 2jgzB 260 60.87 1j0hA 588 61.63 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1w98B 283 61.74 2bnlA 136 62.89 2hf9A 226 62.92 2ev1A 222 63.46 2ysrA 105 63.74 2gysA 419 64.11 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1hx0A 496 64.77 b.71.1.1,c.1.8.1 61346,61347 1mxgA 435 65.12 b.71.1.1,c.1.8.1 85193,85194 2avuE 192 65.33 2pqvA 154 65.53 2r47A 157 65.88 2hewF 152 66.16 b.22.1.1 136364 1kapP 479 66.85 b.80.7.1,d.92.1.6 28012,40298 2dbnA 461 67.28 2vofA 157 69.31 2iagA 482 69.72 2ownA 262 70.69 2hyxA 352 70.85 1gai 472 71.18 2bemA 170 71.24 b.1.18.2 116698 2vsfA 602 72.94 1uwkA 557 73.13 e.51.1.1 108065 2e8yA 718 73.81 1m6yA 301 75.07 a.60.13.1,c.66.1.23 78716,78717 3c3pA 210 76.26 1wxiA 275 78.90 c.26.2.1 121400 2g17A 337 80.72 c.2.1.3,d.81.1.1 134512,134513 1v77A 212 81.02 c.6.3.2 108402 1edgA 380 83.26 c.1.8.3 28807 2guyA 478 84.20 b.71.1.1,c.1.8.1 135754,135755 1mvlA 209 85.57 c.34.1.1 85146 2awfA 172 86.63 d.20.1.1 127432 3ch7A 266 87.94 1iv8A 720 88.05 b.71.1.1,c.1.8.1 76842,76843 1yfuA 174 89.06 b.82.1.20 123094 2zl4A 196 89.14