# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1v38A 78 4.49e-05 a.60.1.2 100280 1b4fA 82 6.24e-05 a.60.1.2 17934 1b0xA 94 0.000114 a.60.1.2 17933 2f3nA 76 0.005901 a.60.1.2 132885 2e8oA 103 0.04135 2qzvA 873 1.470 3bs7A 78 2.593 2dbnA 461 3.454 1fngA 192 4.618 b.1.1.2,d.19.1.1 59904,59905 1wzlA 585 5.584 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1txuA 273 7.017 a.222.1.1 107439 2iqcA 210 7.044 1eg3A 261 8.747 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1a8rA 221 9.021 d.96.1.1 40587 3bs5B 80 9.189 3bs5A 106 10.29 2dh2A 424 10.58 1dceA 567 11.00 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 3bhcA 249 11.60 2ywrA 216 12.31 1hdmB 193 13.21 b.1.1.2,d.19.1.1 21584,38158 1uok 558 15.82 2h6fB 437 16.47 a.102.4.3 136186 1zjaA 557 16.81 1smd 496 17.01 2cchB 260 20.69 a.74.1.1,a.74.1.1 130237,130238 1tyv 542 21.22 2ysrA 105 21.31 2fikA 287 22.85 b.1.1.2,d.19.1.1 133524,133525 2csgA 424 24.87 b.82.2.12 130768 2gysA 419 25.09 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2a90A 240 25.18 1tyhA 248 26.24 a.132.1.3 107458 1a0iA 348 28.10 b.40.4.6,d.142.2.1 25363,41577 1j0hA 588 28.46 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1g63A 181 29.02 c.34.1.1 60299 1cunA 213 29.71 a.7.1.1,a.7.1.1 16313,16314 2gkpA 167 30.08 2ze0A 555 31.00 1ar71 302 31.22 1iqqA 200 31.80 d.124.1.1 66274 1tyvA 554 32.75 b.80.1.6 28038 1iakA 199 32.96 b.1.1.2,d.19.1.1 21625,38199 1x19A 359 33.17 1s2dA 167 35.22 c.23.14.1 98377 1zh2A 121 36.55 c.23.1.1 125069 1d2vC 466 37.04 2z16A 165 37.93 1k2dB 189 38.29 b.1.1.2,d.19.1.1 84293,84294 2ehhA 294 38.59 1z72A 225 39.05 a.132.1.3 124583 1mvlA 209 42.41 c.34.1.1 85146 2cvcA 545 43.22 a.138.1.1 130860 2cvjA 180 43.95 2a9oA 120 44.28 c.23.1.1 126444 1f5qB 252 44.38 a.74.1.1,a.74.1.1 18362,18363 2nuwA 288 44.45 2di3A 239 44.94 1wurA 220 46.17 d.96.1.1 121309 2e8yA 718 46.62 1dmhA 311 46.75 b.3.6.1 22633 2bc4B 211 47.04 1uvqA 197 47.34 b.1.1.2,d.19.1.1 100062,100063 1aa7A 158 48.43 a.95.1.1 18741 1xhfA 123 50.33 c.23.1.1 122003 3cc1A 433 51.03 2i5nC 336 51.44 a.138.1.2 137063 2afaA 425 51.63 a.102.1.3 126668 1mv8A 436 51.75 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1tmxA 293 51.84 2fbaA 492 52.03 a.102.1.1 133239 1w3iA 293 52.10 c.1.10.1 109152 1uokA 558 54.65 b.71.1.1,c.1.8.1 27801,28788 2on5A 206 55.09 2pftA 571 55.67 1ttwA 138 59.12 d.198.1.1 107308 1sfnA 246 59.16 b.82.1.11 105496 1ztpA 251 59.41 d.86.1.2 125649 2qzjA 136 60.16 1tigA 94 60.97 d.68.1.1 39566 1w2yA 229 61.84 a.204.1.1 109140 2aujD 309 61.92 2i51A 195 62.24 1zruA 264 62.42 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2nxbA 123 62.69 2awfA 172 63.85 d.20.1.1 127432 1ar61 302 64.21 2purA 292 64.98 1f3lA 321 65.78 c.66.1.6 59630 1g5aA 628 66.75 b.71.1.1,c.1.8.1 65152,65153 2in5A 207 69.78 1gp6A 356 69.85 b.82.2.1 65441 1s1fA 406 70.13 a.104.1.1 112008 2rfgA 297 70.44 1bplB 294 71.05 b.71.1.1 27716 2d3dA 88 71.51 2psoA 237 71.94 2e50A 225 71.97 2a9gA 418 72.22 d.126.1.4 126435 1jh3A 107 72.53 d.66.1.4 71661 1g94A 448 76.24 b.71.1.1,c.1.8.1 65169,65170 2k3aA 155 76.28 1nhsA 447 76.37 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1satA 471 77.08 b.80.7.1,d.92.1.6 28014,40300 2a4dA 160 77.18 d.20.1.1 126152 1tw3A 360 79.84 a.4.5.29,c.66.1.12 107373,107374 1a0pA 290 79.96 a.60.9.1,d.163.1.1 18105,42165 1y96A 86 81.77 2r3sA 335 83.58 2vg0A 227 83.77 2vsfA 602 84.48 2inpE 118 87.96 2hyxA 352 88.94 1vs0A 310 89.84