# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b0xA 94 1.13e-05 a.60.1.2 17933 1b4fA 82 1.35e-05 a.60.1.2 17934 1v38A 78 1.87e-05 a.60.1.2 100280 2f3nA 76 0.001672 a.60.1.2 132885 2e8oA 103 0.03954 3bs7A 78 0.8435 3bs5A 106 1.959 1qqfA 277 2.119 a.102.4.4 18875 1y71A 130 2.627 b.34.16.1 122677 3bs5B 80 2.805 2dbnA 461 3.981 1nhpA 447 4.144 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1nhsA 447 6.008 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2bs2A 660 7.117 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 2a9gA 418 10.34 d.126.1.4 126435 2r85A 334 13.22 2p2sA 336 13.81 3cc1A 433 14.23 3cxjA 165 14.51 1g63A 181 15.79 c.34.1.1 60299 2qzjA 136 16.55 1a0pA 290 16.92 a.60.9.1,d.163.1.1 18105,42165 1jaeA 471 18.87 b.71.1.1,c.1.8.1 27773,28760 2nuwA 288 19.31 2acyA 98 19.35 d.58.10.1 39298 2a90A 240 20.19 2couA 109 20.67 1eg3A 261 21.63 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2d3dA 88 22.14 1trbA 320 23.00 c.3.1.5,c.3.1.5 30529,30530 1zruA 264 23.08 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2cvjA 180 23.24 1smd 496 23.32 2gqwA 408 23.37 1dceA 567 23.61 a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 2dh2A 424 24.57 2f6kA 307 25.54 c.1.9.15 133047 1f4pA 147 25.67 c.23.5.1 59651 1lw7A 365 25.82 c.26.1.3,c.37.1.1 74295,74296 1xhfA 123 26.08 c.23.1.1 122003 1uok 558 26.64 2avuE 192 26.73 2cchB 260 26.92 a.74.1.1,a.74.1.1 130237,130238 1wzlA 585 27.01 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 3cg0A 140 27.57 3bhcA 249 28.29 2rfgA 297 28.63 2ywrA 216 29.04 2hsbA 126 30.40 2i53A 258 30.63 2vsfA 602 30.76 1g94A 448 32.79 b.71.1.1,c.1.8.1 65169,65170 1u0jA 267 33.98 c.37.1.20 107546 2ehhA 294 34.13 2purA 292 34.81 1a0p 290 35.03 2h21A 440 37.20 a.166.1.1,b.85.7.3 135976,135977 2oszA 93 37.66 3dczA 207 37.80 1yqzA 438 38.36 2zbwA 335 39.94 1qsdA 106 41.08 a.7.5.1 16335 1z3xA 238 41.44 a.118.1.22,a.261.1.1 124416,124417 2imsA 171 42.64 1xqrA 296 44.33 a.118.1.21 122241 1cunA 213 45.06 a.7.1.1,a.7.1.1 16313,16314 3cexA 172 45.21 1mvlA 209 45.71 c.34.1.1 85146 2yvtA 260 45.81 1fr2A 86 46.40 a.28.2.1 83256 1mv8A 436 48.24 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f5qB 252 48.67 a.74.1.1,a.74.1.1 18362,18363 1rrmA 386 48.94 e.22.1.2 105081 3d0cA 314 48.97 1kdgA 546 49.17 c.3.1.2,d.16.1.1 77337,77338 1edgA 380 49.85 c.1.8.3 28807 2fbaA 492 50.18 a.102.1.1 133239 3b4uA 294 50.37 3d1cA 369 50.79 1kugA 203 50.86 d.92.1.9 73008 1keaA 221 51.25 a.96.1.2 68491 2vrqA 496 52.01 1s2dA 167 52.09 c.23.14.1 98377 3dhpA 496 52.33 1w3iA 293 53.23 c.1.10.1 109152 2d2sA 235 53.32 a.118.17.2 131188 2ovrB 445 53.54 2a9oA 120 54.60 c.23.1.1 126444 2vc6A 292 55.29 2p0kA 212 57.60 1zh2A 121 57.64 c.23.1.1 125069 2ibnA 250 57.85 a.211.1.4 137195 1cjcA 460 57.90 c.3.1.1,c.4.1.1 30319,30604 1h7cA 108 57.99 a.7.5.1 70914 2ze0A 555 58.70 2hcnA 595 59.35 1hx0A 496 59.41 b.71.1.1,c.1.8.1 61346,61347 2eq6A 464 60.17 1gxmA 332 61.38 a.102.5.1 76371 3ceyA 474 61.62 2fepA 289 62.18 1hl2A 297 63.31 c.1.10.1 83581 1j9lA 247 63.46 c.106.1.1 62762 2atsA 292 63.93 c.1.10.1 127306 2v3aA 384 63.98 1kapP 479 64.23 b.80.7.1,d.92.1.6 28012,40298 1yirA 408 65.43 c.1.17.2,d.41.2.2 123330,123331 1ztpA 251 65.68 d.86.1.2 125649 3ceaA 346 66.14 1zjaA 557 66.31 1xkyA 301 66.64 c.1.10.1 122094 1xgkA 352 67.10 c.2.1.2 115286 2ysrA 105 68.11 2vofA 157 69.08 1ayx 492 69.47 2ownA 262 73.27 1f74A 293 74.64 c.1.10.1 29079 2pftA 571 76.17 2nmlA 104 76.50 d.330.1.1 138371 2ojpA 292 76.79 2j9wA 102 78.24 2r7hA 177 78.85 1trb 320 79.74 1aa7A 158 79.79 a.95.1.1 18741 1vk2A 204 80.21 c.18.1.2 100845 3cucA 291 81.17 1eteA 134 81.32 a.26.1.2 16869 1umpA 631 81.55 a.102.4.2,a.102.4.2 99619,99620 2vg0A 227 83.69 2d4qA 257 83.72 1o5kA 306 83.94 c.1.10.1 92504 2fiyA 309 85.12 e.59.1.1 133540 1k66A 149 86.50 c.23.1.1 90941 1gaiA 472 87.19 a.102.1.1 18819 1smdA 496 88.07 b.71.1.1,c.1.8.1 27768,28755 3b40A 417 88.09 2hf9A 226 89.23 2gykA 86 89.27 1bplB 294 89.65 b.71.1.1 27716