# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3besR	250	0.4596		
2j9iA	421	1.534		
1o6vA	466	4.580	b.1.18.15,c.10.2.1	81099,81100
1io1A	398	5.527	e.32.1.1	62611
2nn6E	305	6.397		
1uf5A	303	7.795	d.160.1.2	107808
2v0xA	235	8.287		
1lm8V	160	12.42	b.3.3.1	74035
1k8tA	510	15.08	e.41.1.1	68316
3ctzA	623	16.08		
2ja9A	175	17.13		
1udcA	338	17.68	c.2.1.2	29785
1nofA	383	18.91	b.71.1.2,c.1.8.3	92020,92021
2dvkA	188	21.64		
1uarA	285	23.39	c.46.1.2,c.46.1.2	107762,107763
1rxzA	245	23.49	d.131.1.2,d.131.1.2	98067,98068
2fafA	608	23.55		
1tu5A	746	27.65		
2bibA	547	30.35	b.109.1.1,d.157.1.8	128581,128582
1iqqA	200	30.81	d.124.1.1	66274
1wrjA	156	33.56		
3brqA	296	34.45		
1i88A	389	36.45	c.95.1.2,c.95.1.2	66070,66071
1i1nA	226	39.66	c.66.1.7	71102
1rhs	296	39.87		
1sjdA	368	40.52	c.1.11.2,d.54.1.1	105632,105633
1w36B	1180	41.99	c.37.1.19,c.37.1.19,c.52.1.24	114122,114123,114124
1ksiA	642	42.87	b.30.2.1,d.17.2.1,d.17.2.1	24408,38043,38044
1xcbA	211	43.17	a.4.5.38,c.2.1.12	109552,109553
1to6A	371	44.98	c.141.1.1	107170
2eg6A	347	46.44		
2j8kA	201	47.98	b.80.8.1	138141
2qgqA	304	49.21		
1cruA	454	49.28	b.68.2.1	27617
1ylnA	252	50.53	b.45.2.1,b.45.2.2	123657,123658
1zdrA	164	53.61		
2qjtA	352	54.51		
2f4wA	187	55.76	d.20.1.1	132958
1ofcX	304	56.25	a.4.1.3,a.4.1.13,a.187.1.1	92826,92827,92828
2bw2A	140	56.27		
2dfzA	381	56.34		
2bh1A	250	56.92	c.55.1.11,c.55.1.11	128506,128507
2im5A	394	58.75		
2qimA	158	59.88		
2dxnA	274	60.52		
1s2dA	167	60.98	c.23.14.1	98377
2aznA	219	62.11	c.71.1.2	127608
1khbA	625	62.63	c.91.1.1,c.109.1.1	68606,68607
2pbfA	227	63.33		
1bdfA	235	64.28	d.74.3.1,d.181.1.1	39727,42602
1vqoP	149	64.91	a.94.1.1	120377
1yirA	408	65.29	c.1.17.2,d.41.2.2	123330,123331
2pmqA	377	65.51		
2zc8A	369	66.96		
1i24A	404	69.03	c.2.1.2	83663
1qvzA	237	69.25	c.23.16.2	96453
2f3nA	76	69.27	a.60.1.2	132885
1qsaA	618	71.38	a.118.5.1,d.2.1.6	19182,36988
1jeyB	565	72.04	b.131.1.2,c.62.1.4	90372,90373
2j9lA	185	72.30		
1z45A	699	72.74	b.30.5.4,c.2.1.2	124427,124428
2p0dA	129	73.95		
2al6A	375	76.09	a.11.2.1,b.55.1.5,d.15.1.4	126966,126967,126968
1ni5A	433	77.68	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1s4nA	348	77.91	c.68.1.16	98501
2axoA	270	77.98	c.47.1.19	127496
1v6sA	390	78.77	c.86.1.1	100424
2qtsA	438	80.96		
1yumA	242	82.18		
2nxfA	322	84.21		
1xuvA	178	84.53	d.129.3.5	116069
2qg3A	208	86.78		
2h6fB	437	87.17	a.102.4.3	136186
2z3tA	425	89.81