# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s3zA 165 0.04391 d.108.1.1 105250 2ozgA 396 0.05371 2i00A 406 0.1133 2hv2A 400 0.1262 2pc1A 201 0.1311 2q0yA 153 0.1358 2a4nA 182 0.1380 d.108.1.1 126159 2ae6A 166 0.1399 d.108.1.1 126600 1mk4A 157 0.1437 d.108.1.1 84979 1i1dA 161 0.1478 d.108.1.1 61526 1ks9A 291 0.1537 a.100.1.7,c.2.1.6 68857,68858 2qecA 204 0.1883 2o28A 184 0.1888 3c26A 266 0.1970 2q4vA 170 0.1982 d.108.1.1 139878 2dxqA 150 0.2031 2reeA 224 0.2091 1yvoA 172 0.2117 d.108.1.1 124106 2fe7A 166 0.2312 d.108.1.1 133325 2b5gA 171 0.2342 d.108.1.1 127892 1yghA 164 0.2382 d.108.1.1 40802 1qsmA 152 0.2470 d.108.1.1 40808 1gheA 177 0.2589 d.108.1.1 76222 1u6mA 199 0.3015 d.108.1.1 113069 2oh1A 179 0.3016 2pdoA 144 0.3336 1i12A 160 0.3537 d.108.1.1 61515 1yr0A 175 0.3539 d.108.1.1 123905 1qsoA 149 0.3565 d.108.1.1 40812 2j8mA 172 0.3717 1b87A 181 0.3923 d.108.1.1 40797 1qstA 160 0.4275 d.108.1.1 40804 1cjwA 166 0.4295 d.108.1.1 40818 2fiaA 162 0.4362 d.108.1.1 133514 2fl4A 149 0.4575 d.108.1.1 133706 1l0cA 207 0.4715 d.108.1.1 73393 2cntA 160 0.4715 1vhsA 175 0.5269 d.108.1.1 100698 2ob0A 170 0.5470 1tiqA 180 0.5510 d.108.1.1 107010 3blnA 143 0.5921 2i6cA 160 0.5945 d.108.1.1 137095 2cy2A 174 0.6267 d.108.1.1 131016 1kuxA 207 0.6334 d.108.1.1 73021 1z4eA 153 0.7524 d.108.1.1 124431 1z4rA 168 0.8662 d.108.1.1 124444 2euiA 153 0.9230 d.108.1.1 132387 1on0A 158 1.406 d.108.1.1 87095 1xebA 150 1.466 d.108.1.1 115219 1q2yA 140 1.703 d.108.1.1 95655 1bg6 359 1.747 1wwzA 159 1.837 d.108.1.1 121380 2atrA 138 1.916 d.108.1.1 127305 1yk3A 210 2.090 d.108.1.1 123493 2fiwA 172 2.106 d.108.1.1 133539 1nslA 184 2.146 d.108.1.1 86137 1evyA 366 2.223 a.100.1.6,c.2.1.6 18811,30215 1b4fA 82 2.386 a.60.1.2 17934 2gysA 419 2.760 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1cfb 205 3.243 1zx4A 192 3.811 1b0xA 94 3.935 a.60.1.2 17933 1txgA 335 4.157 a.100.1.6,c.2.1.6 112775,112776 1v38A 78 4.282 a.60.1.2 100280 2ganA 190 4.868 d.108.1.1 134889 1y9kA 157 5.004 d.108.1.1 122779 2bswA 146 5.224 d.108.1.1 129127 2prbA 196 5.301 1z82A 335 5.632 2zbwA 335 5.997 1oacA 727 6.292 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3cumA 302 6.521 2v82A 212 7.615 1a3qA 285 8.355 b.1.18.1,b.2.5.3 21932,22447 1jayA 212 9.99 c.2.1.6 66478 1yreA 197 10.07 d.108.1.1 123919 4crxA 322 10.09 a.60.9.1,d.163.1.1 18095,42155 1bkrA 109 10.28 a.40.1.1 17394 1m4iA 181 10.47 d.108.1.1 74457 2jgoA 31 11.30 2r1iA 172 11.77 1f44A 324 12.48 a.60.9.1,d.163.1.1 64982,64983 1sglA 209 12.65 d.124.1.1 105536 1y9bA 90 12.96 a.43.1.9 122777 1xo0A 324 13.12 a.60.9.1,d.163.1.1 115674,115675 1s7kA 182 13.49 d.108.1.1 118878 2opwA 291 14.27 2ahrA 259 14.62 a.100.1.10,c.2.1.6 126775,126776 1bo4A 168 15.15 d.108.1.1 40798 2jdcA 146 15.20 2q0lA 311 15.73 1fl2A 310 15.92 c.3.1.5,c.3.1.5 59869,59870 2pv7A 298 16.14 1vcbC 160 16.26 b.3.3.1 22535 1pbe 394 17.19 2r7hA 177 17.66 1cosA 31 19.67 k.4.1.1 46405 1h7cA 108 19.98 a.7.5.1 70914 2culA 232 20.77 c.3.1.7 130813 1n26A 325 20.95 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1oe4A 247 21.79 c.18.1.3 86895 1lm8V 160 22.42 b.3.3.1 74035 1lvfA 110 22.50 a.47.2.1 74280 2p4qA 497 23.89 1ne2A 200 24.16 c.66.1.32 85586 2f1kA 279 26.19 a.100.1.12,c.2.1.6 132772,132773 2mev1 277 27.91 1dkzA 219 28.25 a.8.4.1,b.130.1.1 90345,90346 1r9hA 135 28.37 d.26.1.1 97260 1a0p 290 28.46 1itbB 315 28.95 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1pud 386 29.66 1r5yA 386 30.75 c.1.20.1 97134 2ew2A 316 32.09 3d0kA 304 32.68 2a38A 194 32.74 1hr6B 443 33.12 d.185.1.1,d.185.1.1 61166,61167 2zdiC 151 33.46 1hfcA 169 35.15 d.92.1.11 40335 1fohA 664 35.49 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1rypG 244 36.29 d.153.1.4 41938 1mp8A 281 36.45 d.144.1.7 91384 1b5qA 472 36.78 c.3.1.2,d.16.1.5 30404,37968 1f42A 306 38.68 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1ks8A 433 39.14 a.102.1.2 77519 1ugnA 198 40.77 b.1.1.4,b.1.1.4 107828,107829 1iqqA 200 42.34 d.124.1.1 66274 1rypF 233 42.77 d.153.1.4 41937 2pgdA 482 43.16 a.100.1.1,c.2.1.6 18778,30190 1ae9A 179 43.30 d.163.1.1 42153 2j8hA 197 44.26 1k0iA 394 44.51 c.3.1.2,d.16.1.2 67942,67943 1x9lA 149 45.26 b.2.10.1 109528 2b7aA 293 45.86 1kb9A 431 46.08 d.185.1.1,d.185.1.1 77311,77312 1y71A 130 46.99 b.34.16.1 122677 2a4dA 160 47.33 d.20.1.1 126152 2iepA 192 49.60 2oszA 93 49.94 2ivnA 330 52.33 2bi7A 384 52.80 1g63A 181 53.71 c.34.1.1 60299 1ykjA 394 54.23 1jjfA 268 57.02 c.69.1.2 66765 2pgd 482 57.54 1nekA 588 57.72 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1xgyL 216 59.32 1wg8A 285 59.90 a.60.13.1,c.66.1.23 114605,114606 1rypA 243 59.97 d.153.1.4 41932 2ewcA 126 61.18 d.79.1.1 132454 2bkdN 134 62.50 2h5nA 133 64.25 2c9hA 444 67.42 2cvjA 180 67.84 2hpuA 175 68.01 1pxgA 382 69.92 c.1.20.1 95287 1mjuL 219 70.67 b.1.1.1,b.1.1.2 91304,91305 2fctA 313 71.17 b.82.2.9 133282 2pajA 492 71.24 1u7iA 136 71.43 d.32.1.7 107724 1y56B 382 72.63 1q9rA 219 72.65 b.1.1.1,b.1.1.2 96305,96306 1q3iA 214 73.25 d.220.1.1 104524 1z2uA 150 73.52 d.20.1.1 124389 2qj2A 184 75.95 1m6iA 493 80.17 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2yvsA 219 80.34 2zc2A 78 82.22 1d4aA 273 83.29 c.23.5.3 31219 2rdqA 288 87.04 2fsrA 195 88.24 d.108.1.1 134036 1trbA 320 89.17 c.3.1.5,c.3.1.5 30529,30530 3cloA 258 89.32 1jssA 224 89.71 d.129.3.2 71844