# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2i00A 406 0.02519 1s3zA 165 0.03050 d.108.1.1 105250 2hv2A 400 0.03909 2ozgA 396 0.03927 2ae6A 166 0.04839 d.108.1.1 126600 1mk4A 157 0.04979 d.108.1.1 84979 2pc1A 201 0.05592 2dxqA 150 0.05885 2qecA 204 0.06105 2q0yA 153 0.06558 2reeA 224 0.07473 3c26A 266 0.07484 1yvoA 172 0.08132 d.108.1.1 124106 2a4nA 182 0.08515 d.108.1.1 126159 2q4vA 170 0.08566 d.108.1.1 139878 1i1dA 161 0.08937 d.108.1.1 61526 2fiaA 162 0.09373 d.108.1.1 133514 2oh1A 179 0.1211 2o28A 184 0.1305 2cntA 160 0.1358 2j8mA 172 0.1373 1u6mA 199 0.1395 d.108.1.1 113069 2fe7A 166 0.1407 d.108.1.1 133325 2pdoA 144 0.1613 1yr0A 175 0.1623 d.108.1.1 123905 1yghA 164 0.1637 d.108.1.1 40802 1cjwA 166 0.1811 d.108.1.1 40818 1qsmA 152 0.1837 d.108.1.1 40808 1kuxA 207 0.1859 d.108.1.1 73021 1gheA 177 0.2105 d.108.1.1 76222 1tiqA 180 0.2112 d.108.1.1 107010 2b5gA 171 0.2211 d.108.1.1 127892 1vhsA 175 0.2361 d.108.1.1 100698 1l0cA 207 0.2385 d.108.1.1 73393 1qsoA 149 0.2460 d.108.1.1 40812 1i12A 160 0.2568 d.108.1.1 61515 3blnA 143 0.2722 2i6cA 160 0.3077 d.108.1.1 137095 2euiA 153 0.3208 d.108.1.1 132387 2cy2A 174 0.3322 d.108.1.1 131016 2fl4A 149 0.3439 d.108.1.1 133706 1z4eA 153 0.3997 d.108.1.1 124431 1ks9A 291 0.4198 a.100.1.7,c.2.1.6 68857,68858 1b87A 181 0.4495 d.108.1.1 40797 1qstA 160 0.4972 d.108.1.1 40804 1z4rA 168 0.5290 d.108.1.1 124444 1on0A 158 0.5482 d.108.1.1 87095 1yk3A 210 0.6033 d.108.1.1 123493 2ob0A 170 0.6182 2fiwA 172 0.8556 d.108.1.1 133539 1q2yA 140 1.039 d.108.1.1 95655 1cfb 205 1.100 1nslA 184 1.139 d.108.1.1 86137 1xebA 150 1.218 d.108.1.1 115219 1wwzA 159 1.232 d.108.1.1 121380 1b4fA 82 1.567 a.60.1.2 17934 1zx4A 192 1.659 1bg6 359 1.832 2prbA 196 2.040 2atrA 138 2.155 d.108.1.1 127305 1y9kA 157 2.805 d.108.1.1 122779 1b0xA 94 3.288 a.60.1.2 17933 4crxA 322 4.050 a.60.9.1,d.163.1.1 18095,42155 2bswA 146 4.077 d.108.1.1 129127 2a4dA 160 4.861 d.20.1.1 126152 1evyA 366 5.160 a.100.1.6,c.2.1.6 18811,30215 1m4iA 181 5.756 d.108.1.1 74457 1yreA 197 5.937 d.108.1.1 123919 2ganA 190 6.525 d.108.1.1 134889 2zbwA 335 7.149 1txgA 335 7.383 a.100.1.6,c.2.1.6 112775,112776 1z82A 335 7.455 2r1iA 172 7.666 1v38A 78 7.848 a.60.1.2 100280 1s7kA 182 8.203 d.108.1.1 118878 1xo0A 324 9.305 a.60.9.1,d.163.1.1 115674,115675 2jgoA 31 9.579 3cumA 302 9.885 1oacA 727 10.39 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2opwA 291 10.44 1f44A 324 10.72 a.60.9.1,d.163.1.1 64982,64983 1vcbC 160 10.94 b.3.3.1 22535 2gysA 419 11.00 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2jdcA 146 11.97 1r9hA 135 12.81 d.26.1.1 97260 1jayA 212 12.86 c.2.1.6 66478 2mev1 277 13.33 1a0p 290 13.66 1ne2A 200 13.79 c.66.1.32 85586 1y9bA 90 14.39 a.43.1.9 122777 1z2uA 150 15.03 d.20.1.1 124389 1pbe 394 16.89 2pv7A 298 16.97 1lvfA 110 17.90 a.47.2.1 74280 2r7hA 177 18.39 1lm8V 160 18.83 b.3.3.1 74035 1cosA 31 19.22 k.4.1.1 46405 1bhtA 176 20.04 g.10.1.1,g.14.1.1 44603,44663 2c9hA 444 20.82 1bo4A 168 23.73 d.108.1.1 40798 2culA 232 25.22 c.3.1.7 130813 1g63A 181 25.61 c.34.1.1 60299 1b5qA 472 25.64 c.3.1.2,d.16.1.5 30404,37968 2gjdA 157 26.70 1sglA 209 26.80 d.124.1.1 105536 2q0lA 311 28.13 2nt2A 145 28.85 2f1kA 279 29.28 a.100.1.12,c.2.1.6 132772,132773 2oszA 93 29.54 1f42A 306 29.80 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1n26A 325 30.17 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2ahrA 259 30.54 a.100.1.10,c.2.1.6 126775,126776 2pbcA 102 30.99 1fl2A 310 31.53 c.3.1.5,c.3.1.5 59869,59870 2v82A 212 31.57 1fohA 664 31.59 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1bkrA 109 32.91 a.40.1.1 17394 1qu9A 128 33.57 d.79.1.1 39755 2ew2A 316 33.71 1y71A 130 34.22 b.34.16.1 122677 1zdnA 158 34.70 d.20.1.1 124943 1j7dA 145 34.79 d.20.1.1 62680 1hfcA 169 36.36 d.92.1.11 40335 2qj2A 184 36.44 2bkdN 134 36.64 1bkf 107 37.35 1pud 386 37.40 1a3qA 285 42.18 b.1.18.1,b.2.5.3 21932,22447 2ewcA 126 42.74 d.79.1.1 132454 1r5yA 386 42.92 c.1.20.1 97134 2a38A 194 43.82 1ks8A 433 43.98 a.102.1.2 77519 2zc2A 78 44.35 1dkzA 219 44.40 a.8.4.1,b.130.1.1 90345,90346 2h5nA 133 45.04 1rypG 244 45.65 d.153.1.4 41938 1jatB 138 48.38 d.20.1.1 62819 1zoyA 622 48.85 2o3iA 405 49.54 1qahA 136 49.67 d.79.1.1 96338 2pajA 492 51.35 1ogqA 313 51.60 c.10.2.8 86996 1npeA 267 51.69 b.68.5.1 92032 2rdqA 288 52.12 1nekA 588 53.13 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 3d0kA 304 53.90 1x9lA 149 54.28 b.2.10.1 109528 1nzjA 298 54.75 c.26.1.1 92377 1k0iA 394 55.85 c.3.1.2,d.16.1.2 67942,67943 1y56B 382 56.22 2p4qA 497 56.27 2bi7A 384 56.63 2pfrA 294 56.93 2ap3A 199 57.74 a.24.27.1 127110 1iqqA 200 58.16 d.124.1.1 66274 1xgyL 216 58.63 1aj8A 371 59.81 a.103.1.1 18900 2pgd 482 61.46 1em2A 229 61.83 d.129.3.2 41321 1zylA 328 62.41 1oniA 137 65.11 d.79.1.1 87144 2j8hA 197 66.36 1h7cA 108 67.11 a.7.5.1 70914 2ge3A 170 68.19 d.108.1.1 135044 1mjuL 219 68.44 b.1.1.1,b.1.1.2 91304,91305 2fctA 313 69.53 b.82.2.9 133282 1jy1A 464 69.57 d.136.1.3,d.136.1.3 67438,67439 2pgdA 482 70.70 a.100.1.1,c.2.1.6 18778,30190 2fnaA 357 71.05 a.4.5.11,c.37.1.20 133809,133810 1ykjA 394 72.10 2awgA 118 75.98 1okgA 373 79.56 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1g2rA 100 80.27 d.192.1.1 60231 2fckA 181 80.32 d.108.1.1 133272 1bu8A 452 80.93 b.12.1.2,c.69.1.19 23647,34795 1oohA 126 81.99 a.39.2.1 93383 1rurL 217 83.05 b.1.1.1,b.1.1.2 97881,97882 1rypA 243 83.19 d.153.1.4 41932 1hr6B 443 83.99 d.185.1.1,d.185.1.1 61166,61167 1q9rA 219 84.26 b.1.1.1,b.1.1.2 96305,96306 1qd9A 124 84.56 d.79.1.1 39758 2ozhA 142 84.78 1yvvA 336 84.79 2yvsA 219 85.47 2fsrA 195 85.63 d.108.1.1 134036 1yu0A 381 85.80 b.163.1.1,d.169.1.8 124025,124026 1itbB 315 86.14 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1d4aA 273 86.34 c.23.5.3 31219 1yh2A 175 87.20 d.20.1.1 123158 1ngzA 213 88.74 b.1.1.1,b.1.1.2 80500,80501