# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozgA 396 0.09868 2a4nA 182 0.1055 d.108.1.1 126159 1s3zA 165 0.1115 d.108.1.1 105250 1mk4A 157 0.1872 d.108.1.1 84979 2oh1A 179 0.2159 2ae6A 166 0.2181 d.108.1.1 126600 2i00A 406 0.2193 2hv2A 400 0.2502 2pc1A 201 0.2632 2q0yA 153 0.2829 2dxqA 150 0.3123 1i1dA 161 0.3150 d.108.1.1 61526 1b87A 181 0.3255 d.108.1.1 40797 3c26A 266 0.3326 2qecA 204 0.3475 1gheA 177 0.3479 d.108.1.1 76222 2q4vA 170 0.4018 d.108.1.1 139878 1u6mA 199 0.4201 d.108.1.1 113069 1yvoA 172 0.4303 d.108.1.1 124106 2fe7A 166 0.4627 d.108.1.1 133325 1qsmA 152 0.4721 d.108.1.1 40808 1ks9A 291 0.4955 a.100.1.7,c.2.1.6 68857,68858 2cntA 160 0.4980 2reeA 224 0.5471 2fl4A 149 0.6004 d.108.1.1 133706 2b5gA 171 0.6038 d.108.1.1 127892 2cy2A 174 0.6135 d.108.1.1 131016 1cjwA 166 0.6138 d.108.1.1 40818 3blnA 143 0.6632 2pdoA 144 0.6852 1i12A 160 0.6869 d.108.1.1 61515 2i6cA 160 0.6961 d.108.1.1 137095 2j8mA 172 0.7007 1yr0A 175 0.7092 d.108.1.1 123905 2ob0A 170 0.7141 2fiaA 162 0.7188 d.108.1.1 133514 2o28A 184 0.7446 1vhsA 175 0.8259 d.108.1.1 100698 1l0cA 207 0.8314 d.108.1.1 73393 2gysA 419 0.8511 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1tiqA 180 0.8748 d.108.1.1 107010 1yghA 164 0.9415 d.108.1.1 40802 1on0A 158 0.9662 d.108.1.1 87095 1z4eA 153 1.002 d.108.1.1 124431 1q2yA 140 1.038 d.108.1.1 95655 1kuxA 207 1.114 d.108.1.1 73021 1qsoA 149 1.117 d.108.1.1 40812 1xebA 150 1.370 d.108.1.1 115219 1qstA 160 1.426 d.108.1.1 40804 1cs6A 382 1.661 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 2euiA 153 1.788 d.108.1.1 132387 1bg6 359 2.306 1cfb 205 2.308 1nslA 184 2.318 d.108.1.1 86137 2fiwA 172 2.338 d.108.1.1 133539 2opwA 291 2.592 1z82A 335 2.840 1wwzA 159 3.984 d.108.1.1 121380 1z4rA 168 4.060 d.108.1.1 124444 3cumA 302 5.356 1jayA 212 5.631 c.2.1.6 66478 1yk3A 210 6.960 d.108.1.1 123493 1xgyL 216 7.195 1a3qA 285 7.351 b.1.18.1,b.2.5.3 21932,22447 1b4fA 82 7.434 a.60.1.2 17934 2atrA 138 7.539 d.108.1.1 127305 2prbA 196 8.092 1y9kA 157 8.306 d.108.1.1 122779 1oacA 727 8.949 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2zbwA 335 9.158 1y71A 130 9.564 b.34.16.1 122677 2a38A 194 9.621 1b0xA 94 9.924 a.60.1.2 17933 1zanL 214 10.52 1r9hA 135 10.61 d.26.1.1 97260 1forL 210 10.72 b.1.1.1,b.1.1.2 19988,21044 2ganA 190 10.85 d.108.1.1 134889 2fctA 313 10.91 b.82.2.9 133282 2bswA 146 11.06 d.108.1.1 129127 4crxA 322 11.13 a.60.9.1,d.163.1.1 18095,42155 1txgA 335 11.52 a.100.1.6,c.2.1.6 112775,112776 1q9rA 219 12.04 b.1.1.1,b.1.1.2 96305,96306 1m4iA 181 12.36 d.108.1.1 74457 2f1kA 279 12.57 a.100.1.12,c.2.1.6 132772,132773 2gjdA 157 12.73 1zx4A 192 12.85 2j8hA 197 13.29 2ewcA 126 13.54 d.79.1.1 132454 1n0xL 215 13.74 b.1.1.1,b.1.1.2 91532,91533 2ew2A 316 13.93 1f44A 324 14.04 a.60.9.1,d.163.1.1 64982,64983 2r1iA 172 14.39 1evyA 366 14.64 a.100.1.6,c.2.1.6 18811,30215 1s7kA 182 15.12 d.108.1.1 118878 1z2uA 150 15.33 d.20.1.1 124389 2culA 232 15.95 c.3.1.7 130813 2q0lA 311 16.65 1dkzA 219 16.70 a.8.4.1,b.130.1.1 90345,90346 2ih3B 212 16.95 1e6oL 212 17.03 b.1.1.1,b.1.1.2 20494,21452 1xo0A 324 17.05 a.60.9.1,d.163.1.1 115674,115675 1tetL 216 17.55 b.1.1.1,b.1.1.2 19902,20996 2q7nA 488 17.90 1u9aA 160 18.22 d.20.1.1 38333 1rurL 217 18.30 b.1.1.1,b.1.1.2 97881,97882 1ngzA 213 18.38 b.1.1.1,b.1.1.2 80500,80501 2a4dA 160 18.40 d.20.1.1 126152 1bo4A 168 18.50 d.108.1.1 40798 2aabL 218 19.67 3d9aL 213 19.79 1mjuL 219 20.69 b.1.1.1,b.1.1.2 91304,91305 2r7hA 177 20.93 1yreA 197 20.96 d.108.1.1 123919 1fl2A 310 22.09 c.3.1.5,c.3.1.5 59869,59870 1a0p 290 22.98 1v38A 78 23.92 a.60.1.2 100280 1zoyA 622 24.13 2jgoA 31 24.66 2jdcA 146 24.83 2ahrA 259 24.91 a.100.1.10,c.2.1.6 126775,126776 1mexL 213 25.44 b.1.1.1,b.1.1.2 91259,91260 1pbe 394 26.88 15c8L 213 27.27 b.1.1.1,b.1.1.2 20300,21292 1ztxL 212 28.43 2zdiC 151 28.52 1c5cL 214 28.65 b.1.1.1,b.1.1.2 20474,21438 1zdnA 158 28.67 d.20.1.1 124943 1lm8V 160 29.35 b.3.3.1 74035 1ne2A 200 31.01 c.66.1.32 85586 3baeL 218 31.78 2adgA 214 31.80 2v82A 212 31.86 2ajuL 216 32.10 1jatA 155 32.65 d.20.1.1 62818 2iepA 192 33.93 1y9bA 90 34.21 a.43.1.9 122777 1ledA 243 34.84 b.29.1.1 24039 2grrA 161 35.03 2rdqA 288 35.78 2p4qA 497 36.15 1itbB 315 36.60 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2yvsA 219 36.68 1vcbC 160 38.70 b.3.3.1 22535 2pbcA 102 38.93 2fnaA 357 39.43 a.4.5.11,c.37.1.20 133809,133810 1ncwL 219 40.08 b.1.1.1,b.1.1.2 85557,85558 1b5qA 472 40.25 c.3.1.2,d.16.1.5 30404,37968 1f42A 306 40.76 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2v5iA 559 42.24 2bi7A 384 42.51 1k0iA 394 42.53 c.3.1.2,d.16.1.2 67942,67943 1yf9A 171 42.94 d.20.1.1 123054 1fohA 664 42.96 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1em2A 229 43.75 d.129.3.2 41321 1bkf 107 43.80 1cosA 31 44.19 k.4.1.1 46405 1j7dA 145 44.48 d.20.1.1 62680 1twfK 120 45.93 d.74.3.2 112736 2awgA 118 46.33 1nekA 588 46.68 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1kcvL 214 47.91 b.1.1.1,b.1.1.2 72317,72318 2fbjL 213 49.02 b.1.1.1,b.1.1.2 19850,20954 2bepA 159 49.86 d.20.1.1 128385 1bkrA 109 50.06 a.40.1.1 17394 1u00A 227 50.35 a.8.4.1,b.130.1.1 112900,112901 1fzyA 149 51.18 d.20.1.1 65072 2h5nA 133 51.49 1jatB 138 52.47 d.20.1.1 62819 1ugnA 198 53.65 b.1.1.4,b.1.1.4 107828,107829 1gsmA 210 53.80 b.1.1.4,b.1.1.4 65535,65536 2illA 195 53.88 1n71A 180 55.00 d.108.1.1 85370 1ykjA 394 55.45 1bu8A 452 57.05 b.12.1.2,c.69.1.19 23647,34795 1um5L 219 57.27 b.1.1.1,b.1.1.2 113304,113305 1vpdA 299 58.06 a.100.1.1,c.2.1.6 113951,113952 2pgd 482 58.74 1lvfA 110 58.75 a.47.2.1 74280 1jbbA 153 58.81 d.20.1.1 62842 1h7cA 108 60.66 a.7.5.1 70914 1w4xA 542 62.21 c.3.1.5,c.3.1.5 109171,109172 2oszA 93 66.04 1oohA 126 66.58 a.39.2.1 93383 3bojA 213 67.08 2pv7A 298 68.05 1rypG 244 69.60 d.153.1.4 41938 1y56B 382 70.21 2zc2A 78 70.94 1kgsA 225 71.49 a.4.6.1,c.23.1.1 68596,68597 2fjbA 643 72.87 1pne 140 74.04 1hfcA 169 76.51 d.92.1.11 40335 2e3nA 255 77.33 1mun 225 77.62 1l9cA 389 78.21 c.3.1.2,d.16.1.3 77815,77816 2pgdA 482 78.48 a.100.1.1,c.2.1.6 18778,30190 1fcdA 401 80.27 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1wg8A 285 80.45 a.60.13.1,c.66.1.23 114605,114606 1becA 238 80.48 b.1.1.1,b.1.1.2 20627,21561 1uxyA 340 82.30 d.145.1.2,d.146.1.1 41748,41761 1dy9A 187 83.20 b.47.1.3 26400 2g5cA 281 83.40 a.100.1.12,c.2.1.6 134646,134647 2i6vA 87 83.42 2rikA 284 83.79 2fckA 181 85.49 d.108.1.1 133272 1trbA 320 87.43 c.3.1.5,c.3.1.5 30529,30530 1yvvA 336 87.62 1x9lA 149 89.73 b.2.10.1 109528