# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ks9A 291 0.08890 a.100.1.7,c.2.1.6 68857,68858 2ozgA 396 0.1108 1s3zA 165 0.1836 d.108.1.1 105250 1mk4A 157 0.1948 d.108.1.1 84979 1i1dA 161 0.2049 d.108.1.1 61526 2o28A 184 0.2259 3c26A 266 0.2545 2a4nA 182 0.2909 d.108.1.1 126159 2hv2A 400 0.3437 2pc1A 201 0.3632 2i00A 406 0.3859 1gheA 177 0.3876 d.108.1.1 76222 2q4vA 170 0.4050 d.108.1.1 139878 2q0yA 153 0.4520 2ae6A 166 0.4639 d.108.1.1 126600 1yghA 164 0.4708 d.108.1.1 40802 2dxqA 150 0.4886 2reeA 224 0.5096 2fe7A 166 0.5102 d.108.1.1 133325 2oh1A 179 0.5462 2qecA 204 0.5499 2b5gA 171 0.6310 d.108.1.1 127892 1yvoA 172 0.6363 d.108.1.1 124106 1u6mA 199 0.6579 d.108.1.1 113069 2pdoA 144 0.6777 1z4rA 168 0.7500 d.108.1.1 124444 2fl4A 149 0.7515 d.108.1.1 133706 2fiaA 162 0.7683 d.108.1.1 133514 1i12A 160 0.8382 d.108.1.1 61515 1qstA 160 0.9111 d.108.1.1 40804 1b87A 181 0.9652 d.108.1.1 40797 1qsmA 152 0.9717 d.108.1.1 40808 1qsoA 149 0.996 d.108.1.1 40812 1l0cA 207 1.074 d.108.1.1 73393 2j8mA 172 1.132 1yr0A 175 1.138 d.108.1.1 123905 2i6cA 160 1.168 d.108.1.1 137095 2ganA 190 1.193 d.108.1.1 134889 2atrA 138 1.299 d.108.1.1 127305 1b0xA 94 1.303 a.60.1.2 17933 2euiA 153 1.357 d.108.1.1 132387 2cntA 160 1.420 1cjwA 166 1.427 d.108.1.1 40818 2cy2A 174 1.445 d.108.1.1 131016 3blnA 143 1.567 1tiqA 180 1.635 d.108.1.1 107010 2ob0A 170 1.750 1kuxA 207 1.805 d.108.1.1 73021 1vhsA 175 1.976 d.108.1.1 100698 1b4fA 82 2.464 a.60.1.2 17934 2gysA 419 2.688 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1oacA 727 2.770 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1txgA 335 2.858 a.100.1.6,c.2.1.6 112775,112776 1z4eA 153 3.076 d.108.1.1 124431 1on0A 158 3.356 d.108.1.1 87095 1evyA 366 3.405 a.100.1.6,c.2.1.6 18811,30215 1v38A 78 3.461 a.60.1.2 100280 1wwzA 159 3.633 d.108.1.1 121380 1zx4A 192 3.836 1bg6 359 4.016 1q2yA 140 4.032 d.108.1.1 95655 1cfb 205 4.187 2fiwA 172 4.323 d.108.1.1 133539 1yk3A 210 5.207 d.108.1.1 123493 1xebA 150 6.773 d.108.1.1 115219 1z82A 335 7.107 1a3qA 285 7.270 b.1.18.1,b.2.5.3 21932,22447 1lvfA 110 8.020 a.47.2.1 74280 3cumA 302 8.296 2jdcA 146 8.352 1nslA 184 8.910 d.108.1.1 86137 2zdiC 151 9.100 2jgoA 31 9.895 1itbB 315 10.55 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1y9kA 157 11.46 d.108.1.1 122779 1h7cA 108 11.80 a.7.5.1 70914 2v82A 212 13.08 1vcbC 160 13.79 b.3.3.1 22535 1cosA 31 14.09 k.4.1.1 46405 2pv7A 298 15.08 1bkrA 109 15.77 a.40.1.1 17394 2bswA 146 16.75 d.108.1.1 129127 1y9bA 90 16.82 a.43.1.9 122777 2p4qA 497 17.17 4crxA 322 18.04 a.60.9.1,d.163.1.1 18095,42155 1m4iA 181 18.40 d.108.1.1 74457 1jayA 212 18.43 c.2.1.6 66478 1zanL 214 20.25 1y71A 130 20.62 b.34.16.1 122677 2iepA 192 21.55 1r5yA 386 21.94 c.1.20.1 97134 1rypG 244 22.48 d.153.1.4 41938 1n26A 325 22.94 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1mjuL 219 23.34 b.1.1.1,b.1.1.2 91304,91305 1f44A 324 23.37 a.60.9.1,d.163.1.1 64982,64983 2a38A 194 23.67 1pud 386 23.81 1xo0A 324 23.85 a.60.9.1,d.163.1.1 115674,115675 2prbA 196 24.21 2zbwA 335 24.56 1xgyL 216 25.72 1sglA 209 26.51 d.124.1.1 105536 1lm8V 160 26.82 b.3.3.1 74035 1q9rA 219 29.31 b.1.1.1,b.1.1.2 96305,96306 1fl2A 310 29.81 c.3.1.5,c.3.1.5 59869,59870 1ks8A 433 30.58 a.102.1.2 77519 1a0p 290 31.17 2pgdA 482 31.24 a.100.1.1,c.2.1.6 18778,30190 1rypF 233 31.78 d.153.1.4 41937 2mev1 277 32.28 2yvsA 219 34.10 2ahrA 259 36.75 a.100.1.10,c.2.1.6 126775,126776 1dkzA 219 37.52 a.8.4.1,b.130.1.1 90345,90346 1iqqA 200 39.24 d.124.1.1 66274 2a4dA 160 39.28 d.20.1.1 126152 1hr6B 443 40.26 d.185.1.1,d.185.1.1 61166,61167 2f1kA 279 40.39 a.100.1.12,c.2.1.6 132772,132773 2rdqA 288 40.44 1pbe 394 40.73 1gk8A 475 40.80 c.1.14.1,d.58.9.1 65234,65235 1mp8A 281 41.67 d.144.1.7 91384 1ne2A 200 42.27 c.66.1.32 85586 1np3A 338 42.37 a.100.1.2,c.2.1.6 85946,85947 1r9hA 135 43.03 d.26.1.1 97260 2ajuL 216 43.24 1pxgA 382 43.58 c.1.20.1 95287 1ztxL 212 43.74 2q0lA 311 44.00 1rypA 243 44.41 d.153.1.4 41932 2j8hA 197 44.58 1ugnA 198 45.06 b.1.1.4,b.1.1.4 107828,107829 2r7hA 177 45.22 2c9hA 444 46.84 1n0xL 215 47.06 b.1.1.1,b.1.1.2 91532,91533 2culA 232 48.30 c.3.1.7 130813 2gjdA 157 49.22 1c5cL 214 49.59 b.1.1.1,b.1.1.2 20474,21438 2ivnA 330 49.99 1rurL 217 52.21 b.1.1.1,b.1.1.2 97881,97882 1q3iA 214 52.26 d.220.1.1 104524 2bkdN 134 52.33 1ledA 243 52.46 b.29.1.1 24039 1cs6A 382 52.63 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 2r1iA 172 52.64 1forL 210 53.29 b.1.1.1,b.1.1.2 19988,21044 1yreA 197 54.40 d.108.1.1 123919 1g63A 181 55.24 c.34.1.1 60299 1jjfA 268 55.66 c.69.1.2 66765 2oszA 93 55.79 1f42A 306 57.07 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1tetL 216 57.87 b.1.1.1,b.1.1.2 19902,20996 1s7kA 182 58.50 d.108.1.1 118878 3c0tA 207 58.89 1ngzA 213 59.06 b.1.1.1,b.1.1.2 80500,80501 1wg8A 285 59.25 a.60.13.1,c.66.1.23 114605,114606 2aabL 218 59.41 2pajA 492 60.76 1elkA 157 61.24 a.118.9.2 19217 2ew2A 316 61.77 1ogqA 313 63.39 c.10.2.8 86996 2zc2A 78 66.06 2nt2A 145 67.09 1p4uA 153 69.40 b.1.10.2 87780 2ap3A 199 69.60 a.24.27.1 127110 1kb9A 431 69.77 d.185.1.1,d.185.1.1 77311,77312 2hkvA 149 70.22 2ih3B 212 70.68 2i5uA 83 71.35 2b7aA 293 73.17 3d9aL 213 73.51 2fctA 313 74.51 b.82.2.9 133282 1e6oL 212 75.15 b.1.1.1,b.1.1.2 20494,21452 2fnaA 357 76.49 a.4.5.11,c.37.1.20 133809,133810 1d4aA 273 77.86 c.23.5.3 31219 2e0tA 151 78.21 1hlgA 371 79.27 c.69.1.6 34656 2qj2A 184 80.49 1bkf 107 80.61 2pgd 482 80.68 1y56B 382 82.58 1ooyA 481 83.51 c.124.1.3,c.124.1.2 93388,93389 15c8L 213 83.61 b.1.1.1,b.1.1.2 20300,21292 1ujxA 119 83.86 b.26.1.2 99473 1or0B 528 85.03 1oohA 126 85.47 a.39.2.1 93383 1twfK 120 87.55 d.74.3.2 112736 1fxkC 133 88.04 a.2.5.1 15702 3cloA 258 89.00 3d0kA 304 89.51