# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozgA 396 0.1051 1ks9A 291 0.1072 a.100.1.7,c.2.1.6 68857,68858 1i1dA 161 0.1787 d.108.1.1 61526 1s3zA 165 0.1958 d.108.1.1 105250 1mk4A 157 0.2206 d.108.1.1 84979 3c26A 266 0.2586 2a4nA 182 0.2606 d.108.1.1 126159 2o28A 184 0.2629 2hv2A 400 0.3164 2pc1A 201 0.3424 2i00A 406 0.3453 2q4vA 170 0.3725 d.108.1.1 139878 1gheA 177 0.3897 d.108.1.1 76222 2q0yA 153 0.4164 2dxqA 150 0.4381 2ae6A 166 0.4762 d.108.1.1 126600 2reeA 224 0.4913 2qecA 204 0.5081 2fe7A 166 0.5673 d.108.1.1 133325 1u6mA 199 0.6291 d.108.1.1 113069 1yghA 164 0.6345 d.108.1.1 40802 2fl4A 149 0.6387 d.108.1.1 133706 2b5gA 171 0.6444 d.108.1.1 127892 2oh1A 179 0.6551 2pdoA 144 0.6586 1yvoA 172 0.7058 d.108.1.1 124106 1i12A 160 0.7214 d.108.1.1 61515 2fiaA 162 0.8348 d.108.1.1 133514 1qsmA 152 0.8834 d.108.1.1 40808 1b87A 181 0.9022 d.108.1.1 40797 1qsoA 149 0.9761 d.108.1.1 40812 1l0cA 207 0.995 d.108.1.1 73393 1qstA 160 1.047 d.108.1.1 40804 1yr0A 175 1.122 d.108.1.1 123905 2i6cA 160 1.147 d.108.1.1 137095 2cy2A 174 1.154 d.108.1.1 131016 1z4rA 168 1.192 d.108.1.1 124444 1cjwA 166 1.201 d.108.1.1 40818 2euiA 153 1.203 d.108.1.1 132387 2cntA 160 1.210 2j8mA 172 1.230 3blnA 143 1.458 2ob0A 170 1.484 2atrA 138 1.540 d.108.1.1 127305 1tiqA 180 1.593 d.108.1.1 107010 1b0xA 94 1.762 a.60.1.2 17933 1kuxA 207 1.837 d.108.1.1 73021 2ganA 190 1.846 d.108.1.1 134889 1vhsA 175 2.054 d.108.1.1 100698 1txgA 335 2.250 a.100.1.6,c.2.1.6 112775,112776 1on0A 158 2.418 d.108.1.1 87095 1z4eA 153 2.516 d.108.1.1 124431 1bg6 359 2.655 1evyA 366 2.780 a.100.1.6,c.2.1.6 18811,30215 1q2yA 140 2.974 d.108.1.1 95655 1b4fA 82 3.080 a.60.1.2 17934 1oacA 727 3.248 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1zx4A 192 3.367 1wwzA 159 3.481 d.108.1.1 121380 1xebA 150 3.529 d.108.1.1 115219 1v38A 78 3.990 a.60.1.2 100280 2fiwA 172 4.318 d.108.1.1 133539 2gysA 419 4.735 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1z82A 335 4.936 1cfb 205 6.408 1nslA 184 6.883 d.108.1.1 86137 1a3qA 285 8.080 b.1.18.1,b.2.5.3 21932,22447 1yk3A 210 8.222 d.108.1.1 123493 2jdcA 146 8.930 3cumA 302 9.059 1lvfA 110 11.09 a.47.2.1 74280 4crxA 322 11.94 a.60.9.1,d.163.1.1 18095,42155 1jayA 212 12.00 c.2.1.6 66478 2zbwA 335 12.16 2v82A 212 13.31 1r5yA 386 13.74 c.1.20.1 97134 1y9kA 157 13.82 d.108.1.1 122779 1pud 386 14.15 2jgoA 31 14.31 2zdiC 151 14.90 1vcbC 160 15.12 b.3.3.1 22535 2p4qA 497 16.62 1y9bA 90 17.08 a.43.1.9 122777 1xo0A 324 17.39 a.60.9.1,d.163.1.1 115674,115675 1f44A 324 17.78 a.60.9.1,d.163.1.1 64982,64983 1cosA 31 17.88 k.4.1.1 46405 1bkrA 109 17.93 a.40.1.1 17394 1h7cA 108 18.95 a.7.5.1 70914 1fl2A 310 19.69 c.3.1.5,c.3.1.5 59869,59870 2prbA 196 21.31 1m4iA 181 21.38 d.108.1.1 74457 2a38A 194 21.57 2j8hA 197 21.58 2pv7A 298 21.95 1y71A 130 22.04 b.34.16.1 122677 1pbe 394 22.06 2bswA 146 22.13 d.108.1.1 129127 1itbB 315 22.14 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1mjuL 219 22.56 b.1.1.1,b.1.1.2 91304,91305 2f1kA 279 24.86 a.100.1.12,c.2.1.6 132772,132773 1a0p 290 25.13 2pgdA 482 25.39 a.100.1.1,c.2.1.6 18778,30190 2iepA 192 25.88 1xgyL 216 26.18 2ahrA 259 26.21 a.100.1.10,c.2.1.6 126775,126776 1pxgA 382 26.40 c.1.20.1 95287 1ne2A 200 26.47 c.66.1.32 85586 1ks8A 433 27.37 a.102.1.2 77519 1lm8V 160 28.33 b.3.3.1 74035 1rypG 244 28.75 d.153.1.4 41938 2q0lA 311 29.13 1zanL 214 31.06 2fctA 313 31.24 b.82.2.9 133282 2r7hA 177 33.07 2mev1 277 34.36 2a4dA 160 34.37 d.20.1.1 126152 1rypF 233 35.14 d.153.1.4 41937 2opwA 291 36.48 1q9rA 219 36.73 b.1.1.1,b.1.1.2 96305,96306 2r1iA 172 36.84 2yvsA 219 36.88 2culA 232 37.44 c.3.1.7 130813 2ajuL 216 38.57 2bkdN 134 39.28 1f42A 306 41.44 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1hr6B 443 42.30 d.185.1.1,d.185.1.1 61166,61167 1ugnA 198 42.46 b.1.1.4,b.1.1.4 107828,107829 2c9hA 444 42.68 1jjfA 268 44.40 c.69.1.2 66765 1sglA 209 45.13 d.124.1.1 105536 1mp8A 281 45.19 d.144.1.7 91384 2ew2A 316 45.89 1yreA 197 46.02 d.108.1.1 123919 1iqqA 200 46.33 d.124.1.1 66274 2oszA 93 47.09 1n26A 325 47.22 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1wg8A 285 48.84 a.60.13.1,c.66.1.23 114605,114606 2ivnA 330 49.21 1y56B 382 50.85 2rdqA 288 51.02 1s7kA 182 51.23 d.108.1.1 118878 1dkzA 219 51.81 a.8.4.1,b.130.1.1 90345,90346 1g63A 181 52.76 c.34.1.1 60299 2gjdA 157 54.71 1rypA 243 55.68 d.153.1.4 41932 1ztxL 212 57.08 2pgd 482 57.50 1p4uA 153 57.84 b.1.10.2 87780 1tetL 216 58.11 b.1.1.1,b.1.1.2 19902,20996 1ogqA 313 60.56 c.10.2.8 86996 2pajA 492 61.98 1n0xL 215 62.19 b.1.1.1,b.1.1.2 91532,91533 1fohA 664 62.70 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1forL 210 64.83 b.1.1.1,b.1.1.2 19988,21044 1elkA 157 67.72 a.118.9.2 19217 1kb9A 431 67.97 d.185.1.1,d.185.1.1 77311,77312 2nt2A 145 69.82 1rurL 217 70.11 b.1.1.1,b.1.1.2 97881,97882 1c5cL 214 72.39 b.1.1.1,b.1.1.2 20474,21438 2e0tA 151 72.89 2aabL 218 72.92 2b7aA 293 72.95 3c0tA 207 74.43 1ykjA 394 74.54 1ledA 243 75.16 b.29.1.1 24039 1np3A 338 75.50 a.100.1.2,c.2.1.6 85946,85947 1q3iA 214 75.94 d.220.1.1 104524 1r9hA 135 76.46 d.26.1.1 97260 1gk8A 475 77.12 c.1.14.1,d.58.9.1 65234,65235 2hkvA 149 78.74 1xwwA 157 78.98 2qj2A 184 79.30 1k0iA 394 80.27 c.3.1.2,d.16.1.2 67942,67943 2fnaA 357 83.15 a.4.5.11,c.37.1.20 133809,133810 2i5uA 83 83.74 2pn0A 141 84.45 2zc2A 78 84.88 1ngzA 213 85.90 b.1.1.1,b.1.1.2 80500,80501 1cs6A 382 86.28 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 3bmzA 199 86.62 2ap3A 199 87.05 a.24.27.1 127110 3d0kA 304 87.75 1zoyA 622 87.80 1yvvA 336 88.31 1ppjB 439 89.70 d.185.1.1,d.185.1.1 104254,104255