# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1ks9A 291 0.08643 a.100.1.7,c.2.1.6 68857,68858 2ozgA 396 0.09440 1i1dA 161 0.2206 d.108.1.1 61526 1s3zA 165 0.2254 d.108.1.1 105250 2o28A 184 0.2308 2a4nA 182 0.2485 d.108.1.1 126159 1mk4A 157 0.2579 d.108.1.1 84979 3c26A 266 0.2586 2hv2A 400 0.2882 2i00A 406 0.3042 2pc1A 201 0.3215 2q4vA 170 0.3568 d.108.1.1 139878 2ae6A 166 0.4222 d.108.1.1 126600 1yghA 164 0.4336 d.108.1.1 40802 2dxqA 150 0.4365 2q0yA 153 0.4395 2oh1A 179 0.4922 1gheA 177 0.4932 d.108.1.1 76222 2reeA 224 0.4962 2qecA 204 0.5038 2fe7A 166 0.5074 d.108.1.1 133325 1u6mA 199 0.6081 d.108.1.1 113069 2b5gA 171 0.6527 d.108.1.1 127892 2pdoA 144 0.6595 1yvoA 172 0.7032 d.108.1.1 124106 1z4rA 168 0.7189 d.108.1.1 124444 2fl4A 149 0.8156 d.108.1.1 133706 1qstA 160 0.8292 d.108.1.1 40804 2fiaA 162 0.8759 d.108.1.1 133514 1i12A 160 0.9255 d.108.1.1 61515 1b87A 181 0.9276 d.108.1.1 40797 1qsmA 152 0.9382 d.108.1.1 40808 1l0cA 207 0.9913 d.108.1.1 73393 2cntA 160 1.056 2j8mA 172 1.125 1yr0A 175 1.135 d.108.1.1 123905 1qsoA 149 1.148 d.108.1.1 40812 2i6cA 160 1.257 d.108.1.1 137095 2cy2A 174 1.297 d.108.1.1 131016 1b0xA 94 1.316 a.60.1.2 17933 2euiA 153 1.446 d.108.1.1 132387 2atrA 138 1.469 d.108.1.1 127305 1cjwA 166 1.494 d.108.1.1 40818 2ob0A 170 1.577 3blnA 143 1.631 1tiqA 180 1.645 d.108.1.1 107010 1kuxA 207 1.712 d.108.1.1 73021 2ganA 190 2.030 d.108.1.1 134889 1vhsA 175 2.030 d.108.1.1 100698 1b4fA 82 2.233 a.60.1.2 17934 1txgA 335 2.775 a.100.1.6,c.2.1.6 112775,112776 1v38A 78 2.839 a.60.1.2 100280 1bg6 359 2.850 1oacA 727 2.914 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1evyA 366 3.535 a.100.1.6,c.2.1.6 18811,30215 1wwzA 159 3.557 d.108.1.1 121380 1a3qA 285 3.737 b.1.18.1,b.2.5.3 21932,22447 2fiwA 172 3.816 d.108.1.1 133539 1z4eA 153 3.817 d.108.1.1 124431 1zx4A 192 4.112 1q2yA 140 4.411 d.108.1.1 95655 1cfb 205 4.570 1on0A 158 5.485 d.108.1.1 87095 1z82A 335 5.723 1xebA 150 6.873 d.108.1.1 115219 1yk3A 210 6.940 d.108.1.1 123493 3cumA 302 8.019 2jgoA 31 8.397 1nslA 184 9.013 d.108.1.1 86137 2jdcA 146 9.136 2gysA 419 9.830 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1lvfA 110 10.02 a.47.2.1 74280 2zdiC 151 11.15 1y9kA 157 12.70 d.108.1.1 122779 2v82A 212 13.64 1jayA 212 13.67 c.2.1.6 66478 1bkrA 109 13.81 a.40.1.1 17394 2zbwA 335 14.84 1cosA 31 15.72 k.4.1.1 46405 1vcbC 160 15.92 b.3.3.1 22535 2bswA 146 16.16 d.108.1.1 129127 2p4qA 497 16.47 4crxA 322 16.73 a.60.9.1,d.163.1.1 18095,42155 1h7cA 108 16.84 a.7.5.1 70914 1y9bA 90 17.41 a.43.1.9 122777 1y71A 130 17.57 b.34.16.1 122677 1xgyL 216 17.71 1mjuL 219 18.13 b.1.1.1,b.1.1.2 91304,91305 2pv7A 298 18.79 2j8hA 197 20.22 2iepA 192 21.20 2a38A 194 21.62 1f44A 324 21.67 a.60.9.1,d.163.1.1 64982,64983 1r5yA 386 22.70 c.1.20.1 97134 1xo0A 324 22.82 a.60.9.1,d.163.1.1 115674,115675 1zanL 214 23.01 1itbB 315 24.12 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1rypG 244 24.20 d.153.1.4 41938 1q9rA 219 25.04 b.1.1.1,b.1.1.2 96305,96306 2culA 232 25.86 c.3.1.7 130813 1pud 386 25.90 2ahrA 259 27.54 a.100.1.10,c.2.1.6 126775,126776 2pgdA 482 27.58 a.100.1.1,c.2.1.6 18778,30190 1fl2A 310 27.84 c.3.1.5,c.3.1.5 59869,59870 2yvsA 219 28.12 2prbA 196 28.83 1ks8A 433 29.91 a.102.1.2 77519 1sglA 209 30.70 d.124.1.1 105536 2f1kA 279 32.00 a.100.1.12,c.2.1.6 132772,132773 2ajuL 216 32.13 1rypF 233 32.88 d.153.1.4 41937 1a0p 290 32.99 1ne2A 200 33.54 c.66.1.32 85586 2q0lA 311 33.81 1n26A 325 34.06 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1pbe 394 34.44 1ugnA 198 34.80 b.1.1.4,b.1.1.4 107828,107829 1m4iA 181 35.06 d.108.1.1 74457 2mev1 277 35.48 1tetL 216 38.20 b.1.1.1,b.1.1.2 19902,20996 1mp8A 281 38.57 d.144.1.7 91384 1hr6B 443 39.19 d.185.1.1,d.185.1.1 61166,61167 2bkdN 134 39.77 1pxgA 382 40.14 c.1.20.1 95287 1iqqA 200 40.37 d.124.1.1 66274 1lm8V 160 40.49 b.3.3.1 74035 1n0xL 215 42.41 b.1.1.1,b.1.1.2 91532,91533 2r7hA 177 43.35 1xwwA 157 44.14 1rypA 243 45.27 d.153.1.4 41932 2a4dA 160 45.72 d.20.1.1 126152 1yreA 197 46.25 d.108.1.1 123919 1rurL 217 46.32 b.1.1.1,b.1.1.2 97881,97882 1c5cL 214 46.78 b.1.1.1,b.1.1.2 20474,21438 1gk8A 475 47.61 c.1.14.1,d.58.9.1 65234,65235 2r1iA 172 49.29 1r9hA 135 49.70 d.26.1.1 97260 1ztxL 212 49.82 1e6oL 212 50.04 b.1.1.1,b.1.1.2 20494,21452 1ogqA 313 50.67 c.10.2.8 86996 2pajA 492 51.04 2ew2A 316 51.14 3c0tA 207 51.42 2oszA 93 52.03 1s7kA 182 52.50 d.108.1.1 118878 2gjdA 157 53.00 2aabL 218 53.39 2ivnA 330 53.74 1ledA 243 54.13 b.29.1.1 24039 1forL 210 55.24 b.1.1.1,b.1.1.2 19988,21044 1kb9A 431 55.47 d.185.1.1,d.185.1.1 77311,77312 1elkA 157 57.18 a.118.9.2 19217 1jjfA 268 57.47 c.69.1.2 66765 1q3iA 214 57.81 d.220.1.1 104524 2c9hA 444 58.91 2nt2A 145 59.06 1ngzA 213 60.58 b.1.1.1,b.1.1.2 80500,80501 1y56B 382 62.86 2pgd 482 62.96 1twfK 120 65.06 d.74.3.2 112736 1dkzA 219 67.58 a.8.4.1,b.130.1.1 90345,90346 2ih3B 212 67.94 1uxyA 340 68.89 d.145.1.2,d.146.1.1 41748,41761 1f42A 306 70.15 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 3d9aL 213 70.69 2rdqA 288 71.69 1g63A 181 72.89 c.34.1.1 60299 2fctA 313 74.45 b.82.2.9 133282 2b7aA 293 75.15 1p4uA 153 78.70 b.1.10.2 87780 1wg8A 285 79.95 a.60.13.1,c.66.1.23 114605,114606 2i5uA 83 81.50 15c8L 213 82.72 b.1.1.1,b.1.1.2 20300,21292 2fnaA 357 83.54 a.4.5.11,c.37.1.20 133809,133810 1ooyA 481 83.96 c.124.1.3,c.124.1.2 93388,93389 2pulA 397 85.44 2ap3A 199 86.26 a.24.27.1 127110 1um5L 219 86.49 b.1.1.1,b.1.1.2 113304,113305 2ewcA 126 86.72 d.79.1.1 132454 3d0kA 304 87.25 2hkvA 149 87.77 1l1dA 152 88.27 b.88.1.3 73452