# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a4nA 182 0.2412 d.108.1.1 126159 2ozgA 396 0.5562 1b4fA 82 0.6592 a.60.1.2 17934 2ae6A 166 0.7663 d.108.1.1 126600 2q4vA 170 0.8022 d.108.1.1 139878 1i1dA 161 0.9504 d.108.1.1 61526 1b87A 181 0.9629 d.108.1.1 40797 2b5gA 171 0.9886 d.108.1.1 127892 2qecA 204 1.020 2dxqA 150 1.145 1v38A 78 1.150 a.60.1.2 100280 1b0xA 94 1.231 a.60.1.2 17933 2pc1A 201 1.249 2hv2A 400 1.256 2i00A 406 1.305 2o28A 184 1.338 2cntA 160 1.345 2q0yA 153 1.468 2fe7A 166 1.520 d.108.1.1 133325 1i12A 160 1.575 d.108.1.1 61515 1yvoA 172 1.658 d.108.1.1 124106 1bg6 359 1.676 2reeA 224 1.721 1mk4A 157 1.738 d.108.1.1 84979 1yr0A 175 1.970 d.108.1.1 123905 3c26A 266 2.004 1s3zA 165 2.094 d.108.1.1 105250 2fiaA 162 2.105 d.108.1.1 133514 2zdiC 151 2.266 2j8mA 172 2.511 1u6mA 199 2.610 d.108.1.1 113069 2i6cA 160 2.673 d.108.1.1 137095 1txgA 335 2.674 a.100.1.6,c.2.1.6 112775,112776 1gheA 177 2.990 d.108.1.1 76222 1yghA 164 3.006 d.108.1.1 40802 1l0cA 207 3.078 d.108.1.1 73393 1z82A 335 3.183 3cumA 302 3.348 2pdoA 144 3.466 1cjwA 166 3.742 d.108.1.1 40818 2f1kA 279 3.826 a.100.1.12,c.2.1.6 132772,132773 3blnA 143 4.214 2cy2A 174 4.233 d.108.1.1 131016 2oh1A 179 4.296 1vhsA 175 4.420 d.108.1.1 100698 1evyA 366 4.520 a.100.1.6,c.2.1.6 18811,30215 1ks9A 291 4.525 a.100.1.7,c.2.1.6 68857,68858 1qstA 160 4.543 d.108.1.1 40804 1kuxA 207 4.847 d.108.1.1 73021 1tiqA 180 4.926 d.108.1.1 107010 2ganA 190 5.064 d.108.1.1 134889 1qsmA 152 5.229 d.108.1.1 40808 2ob0A 170 5.239 2fl4A 149 5.524 d.108.1.1 133706 1f44A 324 5.883 a.60.9.1,d.163.1.1 64982,64983 1on0A 158 7.659 d.108.1.1 87095 1qsoA 149 7.905 d.108.1.1 40812 2fiwA 172 8.185 d.108.1.1 133539 1z4eA 153 8.398 d.108.1.1 124431 4crxA 322 8.477 a.60.9.1,d.163.1.1 18095,42155 2ahrA 259 8.515 a.100.1.10,c.2.1.6 126775,126776 1xebA 150 8.676 d.108.1.1 115219 1wwzA 159 8.819 d.108.1.1 121380 1xwwA 157 8.839 2atrA 138 9.281 d.108.1.1 127305 1z4rA 168 9.492 d.108.1.1 124444 1lvfA 110 10.54 a.47.2.1 74280 1yk3A 210 10.73 d.108.1.1 123493 1nslA 184 11.24 d.108.1.1 86137 1xo0A 324 12.90 a.60.9.1,d.163.1.1 115674,115675 2pgd 482 13.16 1y9kA 157 13.18 d.108.1.1 122779 1jayA 212 13.62 c.2.1.6 66478 1q2yA 140 13.64 d.108.1.1 95655 1a0p 290 13.81 1y71A 130 15.27 b.34.16.1 122677 2v82A 212 15.54 2bswA 146 15.79 d.108.1.1 129127 2pv7A 298 16.51 1d4aA 273 17.28 c.23.5.3 31219 2pgdA 482 17.89 a.100.1.1,c.2.1.6 18778,30190 1cfb 205 18.09 2prbA 196 19.04 1s7kA 182 19.29 d.108.1.1 118878 1oacA 727 19.35 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2euiA 153 19.55 d.108.1.1 132387 2ew2A 316 19.69 1zanL 214 20.78 2opwA 291 21.00 2p4qA 497 21.09 1vcbC 160 22.14 b.3.3.1 22535 1ne2A 200 22.68 c.66.1.32 85586 1fxkC 133 23.88 a.2.5.1 15702 2zbwA 335 25.10 1yreA 197 25.62 d.108.1.1 123919 2f06A 144 26.38 d.58.18.11,d.58.18.11 132652,132653 1ae9A 179 27.08 d.163.1.1 42153 1r9hA 135 28.23 d.26.1.1 97260 1vpdA 299 28.36 a.100.1.1,c.2.1.6 113951,113952 2culA 232 29.20 c.3.1.7 130813 1fl2A 310 32.49 c.3.1.5,c.3.1.5 59869,59870 2bhmA 164 32.70 1lm8V 160 32.91 b.3.3.1 74035 1zx4A 192 37.90 2q0lA 311 38.11 1aihA 170 38.25 d.163.1.1 42149 2g4rA 160 38.87 1mjuL 219 39.50 b.1.1.1,b.1.1.2 91304,91305 1pbe 394 41.07 1jatB 138 41.68 d.20.1.1 62819 1q9rA 219 42.27 b.1.1.1,b.1.1.2 96305,96306 1pud 386 43.10 2jdcA 146 43.20 2p2wA 367 44.03 2yvsA 219 44.22 2giyA 191 45.59 b.1.1.1 135254 1zoyA 622 45.69 1pxgA 382 46.67 c.1.20.1 95287 1m4iA 181 46.90 d.108.1.1 74457 1bo4A 168 46.91 d.108.1.1 40798 1r5yA 386 47.34 c.1.20.1 97134 2r1iA 172 48.87 1dkzA 219 49.55 a.8.4.1,b.130.1.1 90345,90346 1n0xL 215 49.93 b.1.1.1,b.1.1.2 91532,91533 1cunA 213 51.54 a.7.1.1,a.7.1.1 16313,16314 2pjkA 178 53.80 1h7cA 108 54.43 a.7.5.1 70914 2qg3A 208 54.69 1a3qA 285 55.44 b.1.18.1,b.2.5.3 21932,22447 1j7dA 145 56.06 d.20.1.1 62680 1pgjA 478 56.76 a.100.1.1,c.2.1.6 18783,30195 2g5cA 281 58.14 a.100.1.12,c.2.1.6 134646,134647 1x91A 153 58.29 a.29.6.1 114975 2a4dA 160 60.80 d.20.1.1 126152 1ppjF 110 61.07 f.27.1.1 104262 1u00A 227 61.67 a.8.4.1,b.130.1.1 112900,112901 1rurL 217 62.19 b.1.1.1,b.1.1.2 97881,97882 1mun 225 62.25 1forL 210 62.37 b.1.1.1,b.1.1.2 19988,21044 2oszA 93 63.61 2zblA 421 63.73 2ivnA 330 64.01 2f4wA 187 67.15 d.20.1.1 132958 2aabL 218 68.69 1w33A 181 69.53 1xgyL 216 71.78 2r7hA 177 72.13 1ooyA 481 72.38 c.124.1.3,c.124.1.2 93388,93389 2bi7A 384 72.42 2fkcA 247 72.72 1tetL 216 73.19 b.1.1.1,b.1.1.2 19902,20996 2ft0A 235 73.22 3b2nA 133 74.30 1ek9A 428 75.03 f.5.1.1 43809 1c5cL 214 75.13 b.1.1.1,b.1.1.2 20474,21438 1qynA 153 75.20 d.33.1.1 96597 1nf2A 268 75.44 c.108.1.10 91849 1b5qA 472 77.20 c.3.1.2,d.16.1.5 30404,37968 1wq3A 322 80.78 2h78A 302 80.89 1wp1A 474 81.61 f.5.1.1 114778 1cs6A 382 82.57 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1qahA 136 82.61 d.79.1.1 96338 1bcfA 158 83.86 a.25.1.1 16648 2ajuL 216 84.52 2pfrA 294 86.60 15c8L 213 87.51 b.1.1.1,b.1.1.2 20300,21292 2gjdA 157 87.78 1aj8A 371 88.28 a.103.1.1 18900 1efpB 252 88.58 c.26.2.3 31636 2a0bA 125 89.08 a.24.10.1 16630 1k0iA 394 89.12 c.3.1.2,d.16.1.2 67942,67943 1ngzA 213 89.74 b.1.1.1,b.1.1.2 80500,80501