# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s3zA 165 0.01415 d.108.1.1 105250 2ozgA 396 0.01761 2hv2A 400 0.05154 2i00A 406 0.05155 2q0yA 153 0.05180 2q4vA 170 0.05366 d.108.1.1 139878 1mk4A 157 0.05489 d.108.1.1 84979 2pc1A 201 0.05532 2ae6A 166 0.05677 d.108.1.1 126600 2a4nA 182 0.05694 d.108.1.1 126159 1i1dA 161 0.05890 d.108.1.1 61526 2dxqA 150 0.06310 2reeA 224 0.07015 3c26A 266 0.07023 2qecA 204 0.07166 2o28A 184 0.07700 2fe7A 166 0.07796 d.108.1.1 133325 1u6mA 199 0.08067 d.108.1.1 113069 2oh1A 179 0.08381 1yvoA 172 0.08621 d.108.1.1 124106 1yghA 164 0.08970 d.108.1.1 40802 1gheA 177 0.09203 d.108.1.1 76222 1qsmA 152 0.1057 d.108.1.1 40808 2b5gA 171 0.1148 d.108.1.1 127892 2pdoA 144 0.1216 1yr0A 175 0.1226 d.108.1.1 123905 1l0cA 207 0.1425 d.108.1.1 73393 1cjwA 166 0.1553 d.108.1.1 40818 1tiqA 180 0.1554 d.108.1.1 107010 2fl4A 149 0.1611 d.108.1.1 133706 1qsoA 149 0.1693 d.108.1.1 40812 2cntA 160 0.1799 1b87A 181 0.1812 d.108.1.1 40797 2ob0A 170 0.1847 2cy2A 174 0.1901 d.108.1.1 131016 2j8mA 172 0.1923 2fiaA 162 0.1940 d.108.1.1 133514 1qstA 160 0.1962 d.108.1.1 40804 1kuxA 207 0.2001 d.108.1.1 73021 1i12A 160 0.2174 d.108.1.1 61515 3blnA 143 0.2266 2i6cA 160 0.2482 d.108.1.1 137095 1ks9A 291 0.2504 a.100.1.7,c.2.1.6 68857,68858 1vhsA 175 0.2545 d.108.1.1 100698 1wwzA 159 0.3340 d.108.1.1 121380 1z4rA 168 0.3633 d.108.1.1 124444 1on0A 158 0.3643 d.108.1.1 87095 1z4eA 153 0.3968 d.108.1.1 124431 2euiA 153 0.4246 d.108.1.1 132387 1q2yA 140 0.5845 d.108.1.1 95655 2gysA 419 0.6630 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2atrA 138 0.7303 d.108.1.1 127305 2fiwA 172 0.7421 d.108.1.1 133539 1xebA 150 0.7456 d.108.1.1 115219 1cfb 205 0.7895 1b4fA 82 0.8252 a.60.1.2 17934 1nslA 184 1.220 d.108.1.1 86137 1b0xA 94 1.273 a.60.1.2 17933 1yk3A 210 1.278 d.108.1.1 123493 1bg6 359 1.777 1oacA 727 2.604 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1txgA 335 2.960 a.100.1.6,c.2.1.6 112775,112776 1zx4A 192 3.264 2prbA 196 3.280 1v38A 78 3.680 a.60.1.2 100280 2bswA 146 3.883 d.108.1.1 129127 1y9kA 157 4.560 d.108.1.1 122779 2zbwA 335 5.197 2r1iA 172 5.231 1evyA 366 5.239 a.100.1.6,c.2.1.6 18811,30215 1yreA 197 5.620 d.108.1.1 123919 2jdcA 146 5.829 3cumA 302 5.841 1bo4A 168 5.949 d.108.1.1 40798 4crxA 322 6.021 a.60.9.1,d.163.1.1 18095,42155 1m4iA 181 6.261 d.108.1.1 74457 1s7kA 182 6.284 d.108.1.1 118878 1xo0A 324 7.172 a.60.9.1,d.163.1.1 115674,115675 2ganA 190 7.188 d.108.1.1 134889 2opwA 291 7.290 1z82A 335 7.295 1f44A 324 7.698 a.60.9.1,d.163.1.1 64982,64983 1ne2A 200 7.768 c.66.1.32 85586 1h7cA 108 8.025 a.7.5.1 70914 2r7hA 177 8.209 2jgoA 31 8.931 1r9hA 135 9.126 d.26.1.1 97260 1pbe 394 10.34 1a3qA 285 11.11 b.1.18.1,b.2.5.3 21932,22447 1lvfA 110 11.83 a.47.2.1 74280 1a0p 290 12.81 1oohA 126 13.22 a.39.2.1 93383 1y9bA 90 13.92 a.43.1.9 122777 1jayA 212 14.43 c.2.1.6 66478 1f42A 306 16.50 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1sglA 209 16.97 d.124.1.1 105536 1cosA 31 18.38 k.4.1.1 46405 1x9lA 149 20.00 b.2.10.1 109528 1mjuL 219 20.45 b.1.1.1,b.1.1.2 91304,91305 1rypG 244 20.50 d.153.1.4 41938 2culA 232 21.92 c.3.1.7 130813 2mev1 277 23.00 1rypF 233 23.71 d.153.1.4 41937 2v82A 212 24.91 1hfcA 169 25.53 d.92.1.11 40335 2q0lA 311 25.55 2a38A 194 25.69 2iepA 192 26.76 1ugnA 198 27.52 b.1.1.4,b.1.1.4 107828,107829 1rypA 243 28.26 d.153.1.4 41932 1n26A 325 28.82 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1b5qA 472 28.87 c.3.1.2,d.16.1.5 30404,37968 2zdiC 151 28.93 1vcbC 160 29.00 b.3.3.1 22535 1zanL 214 29.01 1bkrA 109 29.03 a.40.1.1 17394 2yvsA 219 29.52 2ahrA 259 30.03 a.100.1.10,c.2.1.6 126775,126776 2oszA 93 31.58 2ewcA 126 32.09 d.79.1.1 132454 1dkzA 219 32.51 a.8.4.1,b.130.1.1 90345,90346 1q9rA 219 32.55 b.1.1.1,b.1.1.2 96305,96306 1g63A 181 32.63 c.34.1.1 60299 2pbcA 102 33.22 1y71A 130 33.47 b.34.16.1 122677 1r5yA 386 33.49 c.1.20.1 97134 1pud 386 34.14 1lm8V 160 35.22 b.3.3.1 74035 1ngzA 213 35.42 b.1.1.1,b.1.1.2 80500,80501 2ih3B 212 36.62 1c5cL 214 36.73 b.1.1.1,b.1.1.2 20474,21438 2h5nA 133 37.11 1fl2A 310 37.86 c.3.1.5,c.3.1.5 59869,59870 1forL 210 39.50 b.1.1.1,b.1.1.2 19988,21044 2ba2A 85 39.50 h.1.30.1 128233 2bkdN 134 39.54 1mp8A 281 39.57 d.144.1.7 91384 2b7aA 293 40.66 2pfrA 294 40.87 2i5uA 83 41.53 1k0iA 394 41.91 c.3.1.2,d.16.1.2 67942,67943 2bi7A 384 42.40 1fohA 664 43.09 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1itbB 315 43.43 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2zc2A 78 44.16 1yzyA 413 44.74 c.146.1.1 124292 1ygtA 111 45.03 1iqqA 200 45.46 d.124.1.1 66274 3d0kA 304 45.93 1bkf 107 47.34 1rurL 217 47.53 b.1.1.1,b.1.1.2 97881,97882 1jvwA 167 47.69 d.26.1.1 71907 3c0tA 207 48.22 2j8hA 197 48.85 1n0xL 215 49.54 b.1.1.1,b.1.1.2 91532,91533 1qahA 136 53.07 d.79.1.1 96338 2pgd 482 53.31 2p4qA 497 53.57 1tetL 216 53.67 b.1.1.1,b.1.1.2 19902,20996 1ztxL 212 54.80 1ae9A 179 54.93 d.163.1.1 42153 1u7iA 136 55.24 d.32.1.7 107724 2fnaA 357 55.71 a.4.5.11,c.37.1.20 133809,133810 1xgyL 216 55.79 2rdqA 288 56.54 1oniA 137 57.95 d.79.1.1 87144 2pajA 492 58.49 1e6oL 212 59.73 b.1.1.1,b.1.1.2 20494,21452 1hxvA 113 60.67 d.26.1.1 71089 1um5L 219 61.16 b.1.1.1,b.1.1.2 113304,113305 1ykjA 394 61.40 1mun 225 61.60 2f1kA 279 61.64 a.100.1.12,c.2.1.6 132772,132773 2ifcA 385 62.25 1pxgA 382 63.53 c.1.20.1 95287 1b8fA 509 64.57 a.127.1.2 19434 1fxkC 133 65.24 a.2.5.1 15702 3bojA 213 66.86 2ajuL 216 67.78 1npsA 88 69.18 b.11.1.1 23622 1yvvA 336 69.35 1uxyA 340 70.64 d.145.1.2,d.146.1.1 41748,41761 2qj2A 184 70.74 1mexL 213 71.56 b.1.1.1,b.1.1.2 91259,91260 2fsrA 195 72.01 d.108.1.1 134036 1n71A 180 72.30 d.108.1.1 85370 1or0B 528 73.01 2fbjL 213 73.36 b.1.1.1,b.1.1.2 19850,20954 1jssA 224 73.42 d.129.3.2 71844 1cunA 213 73.60 a.7.1.1,a.7.1.1 16313,16314 1gkmA 509 73.75 a.127.1.2 70228 2adgA 214 73.83 2pgdA 482 74.25 a.100.1.1,c.2.1.6 18778,30190 2aabL 218 75.15 1em2A 229 75.20 d.129.3.2 41321 2o3iA 405 75.30 2hzmA 212 75.56 1vkcA 158 75.74 d.108.1.1 113663 3cloA 258 75.80 1hr6B 443 75.95 d.185.1.1,d.185.1.1 61166,61167 1ujxA 119 80.25 b.26.1.2 99473 1aj8A 371 81.71 a.103.1.1 18900 2pv7A 298 82.10 1w4xA 542 83.10 c.3.1.5,c.3.1.5 109171,109172 2fckA 181 83.15 d.108.1.1 133272 2ozhA 142 84.07 2gp6A 434 84.29 1twfK 120 84.37 d.74.3.2 112736 1trbA 320 85.86 c.3.1.5,c.3.1.5 30529,30530 1bhtA 176 86.89 g.10.1.1,g.14.1.1 44603,44663 1nekA 588 88.44 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1rypB 250 88.53 d.153.1.4 41933