# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rwhA 757 0.8051 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1w0pA 781 0.8936 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2ozgA 396 0.9213 1qsoA 149 2.776 d.108.1.1 40812 2a4nA 182 3.094 d.108.1.1 126159 1ldjA 760 3.396 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1kit 757 4.217 1gheA 177 4.695 d.108.1.1 76222 1xwfA 431 5.619 c.2.1.4,c.23.12.3 122392,122393 2q4vA 170 5.677 d.108.1.1 139878 2q0yA 153 5.756 2ae6A 166 5.815 d.108.1.1 126600 1mk4A 157 5.834 d.108.1.1 84979 2dxqA 150 5.926 1u6mA 199 6.437 d.108.1.1 113069 2cntA 160 6.521 1yvoA 172 6.888 d.108.1.1 124106 2o28A 184 7.036 2fe7A 166 7.330 d.108.1.1 133325 1ks9A 291 7.460 a.100.1.7,c.2.1.6 68857,68858 2b5gA 171 8.121 d.108.1.1 127892 2hv2A 400 8.200 1qsmA 152 8.362 d.108.1.1 40808 1yr0A 175 8.402 d.108.1.1 123905 2pdoA 144 9.527 1l0cA 207 9.767 d.108.1.1 73393 1djxB 624 9.794 a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 2fl4A 149 11.24 d.108.1.1 133706 2i6cA 160 13.05 d.108.1.1 137095 3blnA 143 13.11 1cfb 205 14.16 2o9cA 342 14.64 1gteA 1025 14.86 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2pc1A 201 15.98 1wwzA 159 15.98 d.108.1.1 121380 4dpvZ 584 16.24 b.121.5.2 23377 3c26A 266 17.03 1on0A 158 17.37 d.108.1.1 87095 2uvfA 608 18.06 2ob0A 170 18.07 1z4eA 153 19.11 d.108.1.1 124431 2d0oA 610 20.05 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 1xsjA 778 21.40 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 3bgaA 1010 21.53 2gysA 419 21.64 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1b4fA 82 22.18 a.60.1.2 17934 2ivnA 330 23.25 1c96A 753 23.72 c.8.2.1,c.83.1.1 30727,35403 2fiwA 172 23.94 d.108.1.1 133539 1q2yA 140 24.11 d.108.1.1 95655 1llaA 628 24.65 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1qstA 160 25.13 d.108.1.1 40804 1o7fA 469 26.83 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2atrA 138 27.28 d.108.1.1 127305 1kuxA 207 27.31 d.108.1.1 73021 1b0xA 94 27.59 a.60.1.2 17933 1zx4A 192 29.96 1i1dA 161 30.31 d.108.1.1 61526 4crxA 322 30.77 a.60.9.1,d.163.1.1 18095,42155 1nslA 184 31.06 d.108.1.1 86137 2p8bA 369 31.74 1xebA 150 32.93 d.108.1.1 115219 4ubpC 570 35.89 b.92.1.1,c.1.9.2 28431,29053 1s3zA 165 36.18 d.108.1.1 105250 1pguA 615 36.79 b.69.4.1,b.69.4.1 88069,88070 1rw7A 243 37.50 c.23.16.2 97963 1y5iA 1246 38.41 b.52.2.2,c.81.1.1 122639,122640 1z4rA 168 38.52 d.108.1.1 124444 1a3qA 285 39.92 b.1.18.1,b.2.5.3 21932,22447 1pjxA 314 41.06 b.68.6.1 104167 2fiaA 162 41.11 d.108.1.1 133514 1yk3A 210 41.55 d.108.1.1 123493 1o59A 355 43.05 b.18.1.22,b.18.1.22 92495,92496 3d3iA 761 43.48 1rm6A 769 43.94 d.41.1.1,d.133.1.1 111872,111873 2oh1A 179 44.26 1poiA 317 45.93 c.124.1.2 34153 1s48A 609 47.92 e.8.1.4 98475 1wzlA 585 48.11 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1yifA 533 49.93 b.29.1.23,b.67.2.1 123283,123284 1tiqA 180 50.00 d.108.1.1 107010 1pamA 686 52.41 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1n7oA 721 53.79 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ziwA 680 54.25 1peqA 714 54.54 a.98.1.1,c.7.1.2 104131,104132 1cjwA 166 55.39 d.108.1.1 40818 1v38A 78 55.64 a.60.1.2 100280 2i00A 406 55.82 2prbA 196 56.29 2cfuA 658 56.74 1jhnA 424 56.81 b.104.1.1,b.29.1.12 66722,70060 2j8mA 172 57.47 2bswA 146 57.99 d.108.1.1 129127 1ox0A 430 60.67 c.95.1.1,c.95.1.1 87495,87496 1pg4A 652 60.73 e.23.1.1 88067 2ha9A 446 61.16 1z82A 335 62.23 1oacA 727 64.94 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2zdiC 151 65.29 1txgA 335 65.69 a.100.1.6,c.2.1.6 112775,112776 1bg6 359 66.87 1p2fA 220 66.97 a.4.6.1,c.23.1.1 87720,87721 1yghA 164 67.79 d.108.1.1 40802 2ga8A 359 72.21 2r1iA 172 72.30 1y9kA 157 73.60 d.108.1.1 122779 3b59A 310 73.66 1ja1A 622 74.72 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1xviA 275 74.96 c.108.1.10 116088 2ew2A 316 76.50 2sli 679 76.52 1s7kA 182 77.20 d.108.1.1 118878 1lurA 339 78.70 b.30.5.4 84717 1wkyA 464 80.31 b.18.1.31,c.1.8.3 120992,120993 2nn6B 249 80.79 3c0wA 235 81.26 2giyA 191 81.83 b.1.1.1 135254 1v4vA 376 82.32 c.87.1.3 100313 2pgd 482 83.15 2hpuA 175 83.96 2z3zA 706 84.31 1snzA 344 86.12 b.30.5.4 98930 2j8hA 197 87.17 1bo4A 168 88.19 d.108.1.1 40798 2jdcA 146 88.53 1bpoA 494 88.96 a.118.1.4,b.69.6.1 19143,27670 1c5cL 214 89.15 b.1.1.1,b.1.1.2 20474,21438 2r7hA 177 89.39