# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozgA 396 0.03091 1s3zA 165 0.03132 d.108.1.1 105250 2a4nA 182 0.07569 d.108.1.1 126159 2pc1A 201 0.07720 2i00A 406 0.07734 2ae6A 166 0.08220 d.108.1.1 126600 2hv2A 400 0.09356 2q4vA 170 0.09649 d.108.1.1 139878 2q0yA 153 0.09848 1mk4A 157 0.09895 d.108.1.1 84979 1i1dA 161 0.09901 d.108.1.1 61526 1yghA 164 0.1044 d.108.1.1 40802 1gheA 177 0.1110 d.108.1.1 76222 3c26A 266 0.1116 2qecA 204 0.1164 2o28A 184 0.1167 2dxqA 150 0.1182 2reeA 224 0.1218 1u6mA 199 0.1306 d.108.1.1 113069 2fe7A 166 0.1433 d.108.1.1 133325 1yvoA 172 0.1471 d.108.1.1 124106 2oh1A 179 0.1679 1qsmA 152 0.1811 d.108.1.1 40808 2pdoA 144 0.2025 2b5gA 171 0.2027 d.108.1.1 127892 1qstA 160 0.2153 d.108.1.1 40804 1yr0A 175 0.2168 d.108.1.1 123905 2fiaA 162 0.2374 d.108.1.1 133514 1l0cA 207 0.2447 d.108.1.1 73393 1b87A 181 0.2525 d.108.1.1 40797 2cntA 160 0.2587 2cy2A 174 0.2690 d.108.1.1 131016 2fl4A 149 0.2704 d.108.1.1 133706 1cjwA 166 0.2775 d.108.1.1 40818 1qsoA 149 0.2841 d.108.1.1 40812 1tiqA 180 0.2865 d.108.1.1 107010 1ks9A 291 0.2867 a.100.1.7,c.2.1.6 68857,68858 2ob0A 170 0.3152 2j8mA 172 0.3224 1i12A 160 0.3330 d.108.1.1 61515 1kuxA 207 0.3571 d.108.1.1 73021 1vhsA 175 0.3600 d.108.1.1 100698 3blnA 143 0.4035 2i6cA 160 0.4058 d.108.1.1 137095 1z4rA 168 0.4138 d.108.1.1 124444 1wwzA 159 0.4194 d.108.1.1 121380 1on0A 158 0.4360 d.108.1.1 87095 1q2yA 140 0.6139 d.108.1.1 95655 1cfb 205 0.6729 2euiA 153 0.7030 d.108.1.1 132387 1xebA 150 0.7113 d.108.1.1 115219 1z4eA 153 0.7749 d.108.1.1 124431 2atrA 138 0.8986 d.108.1.1 127305 2fiwA 172 0.9109 d.108.1.1 133539 2gysA 419 0.9682 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1b4fA 82 1.235 a.60.1.2 17934 1b0xA 94 1.514 a.60.1.2 17933 1nslA 184 1.560 d.108.1.1 86137 1bg6 359 1.669 1yk3A 210 2.141 d.108.1.1 123493 1zx4A 192 2.233 1txgA 335 3.328 a.100.1.6,c.2.1.6 112775,112776 1oacA 727 4.042 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1ne2A 200 4.677 c.66.1.32 85586 4crxA 322 4.700 a.60.9.1,d.163.1.1 18095,42155 1v38A 78 5.037 a.60.1.2 100280 2jdcA 146 5.238 2zbwA 335 5.382 2opwA 291 5.508 2prbA 196 5.674 2bswA 146 5.932 d.108.1.1 129127 1f44A 324 6.315 a.60.9.1,d.163.1.1 64982,64983 1xo0A 324 6.332 a.60.9.1,d.163.1.1 115674,115675 1yreA 197 7.012 d.108.1.1 123919 1evyA 366 7.017 a.100.1.6,c.2.1.6 18811,30215 1z82A 335 7.267 1y9kA 157 7.595 d.108.1.1 122779 3cumA 302 7.883 2jgoA 31 8.149 2r1iA 172 9.520 2r7hA 177 9.546 1bo4A 168 9.573 d.108.1.1 40798 2ganA 190 9.653 d.108.1.1 134889 1m4iA 181 9.814 d.108.1.1 74457 1pbe 394 10.32 1s7kA 182 10.63 d.108.1.1 118878 2zdiC 151 11.65 1f42A 306 11.70 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1a0p 290 12.18 1y71A 130 13.37 b.34.16.1 122677 1y9bA 90 13.63 a.43.1.9 122777 1lvfA 110 13.94 a.47.2.1 74280 1a3qA 285 14.00 b.1.18.1,b.2.5.3 21932,22447 1jayA 212 16.05 c.2.1.6 66478 2culA 232 16.26 c.3.1.7 130813 2ba2A 85 17.12 h.1.30.1 128233 1cosA 31 17.64 k.4.1.1 46405 1sglA 209 20.43 d.124.1.1 105536 1h7cA 108 23.56 a.7.5.1 70914 2q0lA 311 23.92 1r9hA 135 25.39 d.26.1.1 97260 1rypG 244 26.08 d.153.1.4 41938 1rypF 233 26.77 d.153.1.4 41937 2mev1 277 27.93 2rdqA 288 28.22 2yvsA 219 28.63 2ewcA 126 28.75 d.79.1.1 132454 2v82A 212 29.19 1fl2A 310 30.39 c.3.1.5,c.3.1.5 59869,59870 1b5qA 472 30.41 c.3.1.2,d.16.1.5 30404,37968 1dkzA 219 31.37 a.8.4.1,b.130.1.1 90345,90346 1hfcA 169 32.77 d.92.1.11 40335 2ahrA 259 32.88 a.100.1.10,c.2.1.6 126775,126776 1ygtA 111 33.36 1rypA 243 33.55 d.153.1.4 41932 1bkrA 109 33.61 a.40.1.1 17394 1z2uA 150 34.46 d.20.1.1 124389 2h5nA 133 35.01 2a38A 194 36.50 1ugnA 198 37.75 b.1.1.4,b.1.1.4 107828,107829 2bi7A 384 37.91 2pfrA 294 38.04 1iqqA 200 38.36 d.124.1.1 66274 1k0iA 394 39.56 c.3.1.2,d.16.1.2 67942,67943 1r5yA 386 39.79 c.1.20.1 97134 1qahA 136 39.90 d.79.1.1 96338 1pud 386 40.36 2oszA 93 41.38 1fohA 664 41.75 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1zanL 214 42.10 1q9rA 219 42.27 b.1.1.1,b.1.1.2 96305,96306 1hr6B 443 42.93 d.185.1.1,d.185.1.1 61166,61167 1mp8A 281 44.02 d.144.1.7 91384 1mjuL 219 45.25 b.1.1.1,b.1.1.2 91304,91305 1ngzA 213 46.53 b.1.1.1,b.1.1.2 80500,80501 1mun 225 46.80 1g63A 181 46.88 c.34.1.1 60299 1oniA 137 49.53 d.79.1.1 87144 3d0kA 304 49.72 1qu9A 128 51.60 d.79.1.1 39755 2f1kA 279 52.85 a.100.1.12,c.2.1.6 132772,132773 1lm8V 160 53.79 b.3.3.1 74035 1yzyA 413 54.17 c.146.1.1 124292 1n26A 325 54.23 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1x9lA 149 54.71 b.2.10.1 109528 2ih3B 212 55.28 1yvvA 336 56.47 1vcbC 160 56.59 b.3.3.1 22535 1c5cL 214 58.60 b.1.1.1,b.1.1.2 20474,21438 1b8fA 509 60.71 a.127.1.2 19434 1ykjA 394 61.52 1forL 210 61.69 b.1.1.1,b.1.1.2 19988,21044 2ifcA 385 62.22 2p4qA 497 62.22 2j8hA 197 62.23 1itbB 315 62.38 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1gkmA 509 63.53 a.127.1.2 70228 2b7aA 293 64.87 1pxgA 382 65.03 c.1.20.1 95287 3bojA 213 65.66 1q3iA 214 66.96 d.220.1.1 104524 2bkdN 134 67.71 1w4xA 542 68.46 c.3.1.5,c.3.1.5 109171,109172 1n0xL 215 68.50 b.1.1.1,b.1.1.2 91532,91533 1cunA 213 68.81 a.7.1.1,a.7.1.1 16313,16314 2pgd 482 69.47 1xgyL 216 70.53 2a4dA 160 72.21 d.20.1.1 126152 1n71A 180 72.71 d.108.1.1 85370 2hpuA 175 73.23 1kb9A 431 73.81 d.185.1.1,d.185.1.1 77311,77312 1oohA 126 75.02 a.39.2.1 93383 1rurL 217 75.30 b.1.1.1,b.1.1.2 97881,97882 1u7iA 136 75.99 d.32.1.7 107724 1ztxL 212 76.34 1nekA 588 76.64 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1bhtA 176 76.79 g.10.1.1,g.14.1.1 44603,44663 2fsrA 195 77.26 d.108.1.1 134036 2zc2A 78 77.31 3cloA 258 79.52 1aj8A 371 80.26 a.103.1.1 18900 2gp6A 434 80.27 1ae9A 179 80.49 d.163.1.1 42153 2fctA 313 80.77 b.82.2.9 133282 2abk 211 81.12 1w33A 181 81.14 2hzmA 212 83.35 2rg4A 216 83.79 1jssA 224 83.85 d.129.3.2 71844 1tetL 216 84.58 b.1.1.1,b.1.1.2 19902,20996 1fxkC 133 84.89 a.2.5.1 15702 1trbA 320 85.55 c.3.1.5,c.3.1.5 30529,30530 2fckA 181 86.01 d.108.1.1 133272 2ozhA 142 86.09 1y56B 382 86.34 2qj2A 184 86.61 2o3iA 405 87.58 2ew2A 316 88.01 1mexL 213 88.03 b.1.1.1,b.1.1.2 91259,91260 2gjdA 157 88.73 1em2A 229 89.02 d.129.3.2 41321 1m6iA 493 89.62 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535