# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozgA 396 0.03426 1s3zA 165 0.04576 d.108.1.1 105250 2a4nA 182 0.04867 d.108.1.1 126159 1mk4A 157 0.07398 d.108.1.1 84979 1ks9A 291 0.07963 a.100.1.7,c.2.1.6 68857,68858 2ae6A 166 0.08353 d.108.1.1 126600 2i00A 406 0.09595 2q4vA 170 0.1014 d.108.1.1 139878 2hv2A 400 0.1017 2qecA 204 0.1189 2q0yA 153 0.1197 2pc1A 201 0.1247 1i1dA 161 0.1339 d.108.1.1 61526 2reeA 224 0.1375 2dxqA 150 0.1430 2fe7A 166 0.1470 d.108.1.1 133325 1u6mA 199 0.1531 d.108.1.1 113069 3c26A 266 0.1544 1gheA 177 0.1549 d.108.1.1 76222 1yghA 164 0.1692 d.108.1.1 40802 1yvoA 172 0.1761 d.108.1.1 124106 2oh1A 179 0.1773 1qsmA 152 0.2009 d.108.1.1 40808 2b5gA 171 0.2330 d.108.1.1 127892 2cntA 160 0.2414 1yr0A 175 0.2479 d.108.1.1 123905 2o28A 184 0.2512 1l0cA 207 0.2577 d.108.1.1 73393 2fl4A 149 0.2677 d.108.1.1 133706 1b87A 181 0.2932 d.108.1.1 40797 2j8mA 172 0.2965 1cjwA 166 0.3138 d.108.1.1 40818 2ob0A 170 0.3144 1tiqA 180 0.3233 d.108.1.1 107010 1qsoA 149 0.3242 d.108.1.1 40812 1i12A 160 0.3313 d.108.1.1 61515 2fiaA 162 0.3330 d.108.1.1 133514 2pdoA 144 0.3351 3blnA 143 0.3405 1qstA 160 0.3506 d.108.1.1 40804 1vhsA 175 0.3525 d.108.1.1 100698 2i6cA 160 0.3776 d.108.1.1 137095 1kuxA 207 0.3934 d.108.1.1 73021 1q2yA 140 0.3994 d.108.1.1 95655 2cy2A 174 0.5049 d.108.1.1 131016 1bg6 359 0.5052 1on0A 158 0.5773 d.108.1.1 87095 1z4rA 168 0.6028 d.108.1.1 124444 1z4eA 153 0.6387 d.108.1.1 124431 1wwzA 159 0.7589 d.108.1.1 121380 1xebA 150 0.7637 d.108.1.1 115219 2euiA 153 0.7984 d.108.1.1 132387 1b4fA 82 0.9584 a.60.1.2 17934 1txgA 335 0.9675 a.100.1.6,c.2.1.6 112775,112776 1z82A 335 1.150 1nslA 184 1.188 d.108.1.1 86137 2fiwA 172 1.196 d.108.1.1 133539 2atrA 138 1.585 d.108.1.1 127305 1b0xA 94 1.717 a.60.1.2 17933 1yk3A 210 2.410 d.108.1.1 123493 2ganA 190 2.584 d.108.1.1 134889 1evyA 366 2.869 a.100.1.6,c.2.1.6 18811,30215 3cumA 302 3.057 2zbwA 335 3.291 1v38A 78 3.356 a.60.1.2 100280 1zx4A 192 3.451 2gysA 419 3.988 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 2culA 232 4.170 c.3.1.7 130813 2f1kA 279 4.374 a.100.1.12,c.2.1.6 132772,132773 2opwA 291 4.536 4crxA 322 4.891 a.60.9.1,d.163.1.1 18095,42155 1y9kA 157 4.981 d.108.1.1 122779 2bswA 146 5.075 d.108.1.1 129127 1f44A 324 5.157 a.60.9.1,d.163.1.1 64982,64983 1yreA 197 5.174 d.108.1.1 123919 1jayA 212 5.351 c.2.1.6 66478 2v82A 212 5.706 1ne2A 200 5.974 c.66.1.32 85586 1cfb 205 6.368 2jdcA 146 6.769 2prbA 196 6.839 1s7kA 182 7.113 d.108.1.1 118878 1pbe 394 7.157 1xo0A 324 7.271 a.60.9.1,d.163.1.1 115674,115675 1oacA 727 7.623 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 2ew2A 316 7.679 2ahrA 259 7.685 a.100.1.10,c.2.1.6 126775,126776 2q0lA 311 8.584 1fl2A 310 8.698 c.3.1.5,c.3.1.5 59869,59870 1y71A 130 9.542 b.34.16.1 122677 1bo4A 168 9.871 d.108.1.1 40798 2pv7A 298 11.03 2r7hA 177 11.63 1a3qA 285 12.07 b.1.18.1,b.2.5.3 21932,22447 1m4iA 181 12.22 d.108.1.1 74457 1b5qA 472 12.25 c.3.1.2,d.16.1.5 30404,37968 1a0p 290 12.53 2r1iA 172 12.63 2jgoA 31 12.72 1r9hA 135 13.14 d.26.1.1 97260 1mp8A 281 13.19 d.144.1.7 91384 2a4dA 160 15.39 d.20.1.1 126152 2p4qA 497 17.74 2yvsA 219 18.92 2zdiC 151 19.25 2ewcA 126 19.44 d.79.1.1 132454 1k0iA 394 19.62 c.3.1.2,d.16.1.2 67942,67943 1y9bA 90 21.24 a.43.1.9 122777 2bi7A 384 22.00 2a38A 194 24.09 1lvfA 110 24.42 a.47.2.1 74280 1cosA 31 24.64 k.4.1.1 46405 1dkzA 219 26.35 a.8.4.1,b.130.1.1 90345,90346 1sglA 209 26.44 d.124.1.1 105536 2j8hA 197 26.55 1fohA 664 26.78 c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2gjdA 157 27.57 1pud 386 28.29 1x9lA 149 30.00 b.2.10.1 109528 1iqqA 200 30.22 d.124.1.1 66274 1vpdA 299 30.85 a.100.1.1,c.2.1.6 113951,113952 1vcbC 160 31.31 b.3.3.1 22535 1ykjA 394 31.55 2b7aA 293 31.86 1ugnA 198 32.78 b.1.1.4,b.1.1.4 107828,107829 1r5yA 386 34.14 c.1.20.1 97134 1bkf 107 35.55 2oszA 93 35.55 2pgdA 482 36.66 a.100.1.1,c.2.1.6 18778,30190 1jssA 224 37.02 d.129.3.2 71844 2pbcA 102 37.11 1h7cA 108 37.13 a.7.5.1 70914 1nekA 588 37.42 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2pgd 482 38.45 1lm8V 160 38.62 b.3.3.1 74035 1em2A 229 38.97 d.129.3.2 41321 1q9rA 219 39.26 b.1.1.1,b.1.1.2 96305,96306 2ba2A 85 40.63 h.1.30.1 128233 1w4xA 542 41.46 c.3.1.5,c.3.1.5 109171,109172 2h5nA 133 41.96 1rypG 244 42.02 d.153.1.4 41938 1trbA 320 42.52 c.3.1.5,c.3.1.5 30529,30530 1zanL 214 42.68 1zk7A 467 45.50 3b2nA 133 45.50 3d0kA 304 46.15 1ledA 243 46.58 b.29.1.1 24039 1jvwA 167 47.17 d.26.1.1 71907 2cvjA 180 47.21 2fjbA 643 47.50 1gk8A 475 47.64 c.1.14.1,d.58.9.1 65234,65235 2zc2A 78 50.11 1yqgA 263 50.24 1fxkC 133 52.37 a.2.5.1 15702 1v0jA 399 54.74 2ap3A 199 56.11 a.24.27.1 127110 1fcdA 401 57.87 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1oohA 126 57.92 a.39.2.1 93383 1ae9A 179 58.07 d.163.1.1 42153 1ks8A 433 58.66 a.102.1.2 77519 1q1rA 431 61.44 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1jjfA 268 63.54 c.69.1.2 66765 1zoyA 622 63.72 1nf2A 268 64.13 c.108.1.10 91849 1m6iA 493 64.15 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2fckA 181 64.31 d.108.1.1 133272 1mun 225 65.10 1itbB 315 65.80 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1rypA 243 66.56 d.153.1.4 41932 1ngzA 213 67.47 b.1.1.1,b.1.1.2 80500,80501 1n71A 180 67.59 d.108.1.1 85370 1n0xL 215 68.01 b.1.1.1,b.1.1.2 91532,91533 1q3iA 214 68.28 d.220.1.1 104524 1ygtA 111 68.34 1n26A 325 68.84 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2ifcA 385 69.75 1bu8A 452 70.78 b.12.1.2,c.69.1.19 23647,34795 1yvvA 336 71.06 1hfcA 169 71.09 d.92.1.11 40335 1mjuL 219 71.32 b.1.1.1,b.1.1.2 91304,91305 1vqwA 457 71.70 c.3.1.5,c.3.1.5 114028,114029 3ladA 476 73.58 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1kb9A 431 75.15 d.185.1.1,d.185.1.1 77311,77312 2g5cA 281 75.50 a.100.1.12,c.2.1.6 134646,134647 1hr6B 443 75.55 d.185.1.1,d.185.1.1 61166,61167 1y56B 382 75.63 1rurL 217 75.97 b.1.1.1,b.1.1.2 97881,97882 2ajuL 216 77.14 3d1cA 369 77.58 1aihA 170 78.21 d.163.1.1 42149 2e3nA 255 79.02 1d7yA 408 79.13 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 2awgA 118 79.61 1yzyA 413 80.02 c.146.1.1 124292 1z2uA 150 80.05 d.20.1.1 124389 1qahA 136 80.10 d.79.1.1 96338 2fnaA 357 80.42 a.4.5.11,c.37.1.20 133809,133810 1yzfA 195 81.60 c.23.10.5 124275 1aj8A 371 85.27 a.103.1.1 18900 1xw8A 252 85.84 c.6.2.5 116111 2ywlA 180 87.88 2huhA 147 88.35 2qj2A 184 88.90 2pulA 397 89.06