# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozgA 396 0.08797 2a4nA 182 0.1397 d.108.1.1 126159 1s3zA 165 0.1835 d.108.1.1 105250 1mk4A 157 0.1871 d.108.1.1 84979 2ae6A 166 0.1879 d.108.1.1 126600 2i00A 406 0.1943 2hv2A 400 0.2035 2pc1A 201 0.2288 1ks9A 291 0.2374 a.100.1.7,c.2.1.6 68857,68858 2q0yA 153 0.2610 2q4vA 170 0.2670 d.108.1.1 139878 3c26A 266 0.2792 2qecA 204 0.2850 2reeA 224 0.2973 1i1dA 161 0.3032 d.108.1.1 61526 1u6mA 199 0.3399 d.108.1.1 113069 2fe7A 166 0.3535 d.108.1.1 133325 2o28A 184 0.3625 1yvoA 172 0.3969 d.108.1.1 124106 2b5gA 171 0.4027 d.108.1.1 127892 2dxqA 150 0.4071 2oh1A 179 0.4101 1yghA 164 0.4443 d.108.1.1 40802 1gheA 177 0.4475 d.108.1.1 76222 2pdoA 144 0.5006 2cntA 160 0.5426 1b87A 181 0.5509 d.108.1.1 40797 2fiaA 162 0.5664 d.108.1.1 133514 1yr0A 175 0.5947 d.108.1.1 123905 1qsmA 152 0.5954 d.108.1.1 40808 2fl4A 149 0.6155 d.108.1.1 133706 2j8mA 172 0.6339 1qstA 160 0.6368 d.108.1.1 40804 2cy2A 174 0.6738 d.108.1.1 131016 1l0cA 207 0.6870 d.108.1.1 73393 1vhsA 175 0.7319 d.108.1.1 100698 2ob0A 170 0.7477 1qsoA 149 0.7530 d.108.1.1 40812 1i12A 160 0.8021 d.108.1.1 61515 1tiqA 180 0.8076 d.108.1.1 107010 2i6cA 160 0.8168 d.108.1.1 137095 1cjwA 166 0.8251 d.108.1.1 40818 3blnA 143 0.8615 1bg6 359 1.139 1b4fA 82 1.217 a.60.1.2 17934 1kuxA 207 1.228 d.108.1.1 73021 1z4rA 168 1.488 d.108.1.1 124444 2fiwA 172 1.560 d.108.1.1 133539 1b0xA 94 1.877 a.60.1.2 17933 1q2yA 140 1.881 d.108.1.1 95655 1z4eA 153 1.970 d.108.1.1 124431 1txgA 335 2.111 a.100.1.6,c.2.1.6 112775,112776 1wwzA 159 2.129 d.108.1.1 121380 1z82A 335 2.135 1xebA 150 2.179 d.108.1.1 115219 1evyA 366 2.491 a.100.1.6,c.2.1.6 18811,30215 2euiA 153 2.533 d.108.1.1 132387 1nslA 184 2.716 d.108.1.1 86137 1cfb 205 3.273 1v38A 78 3.339 a.60.1.2 100280 1on0A 158 3.411 d.108.1.1 87095 1yk3A 210 3.697 d.108.1.1 123493 2atrA 138 3.852 d.108.1.1 127305 1oacA 727 4.438 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 3cumA 302 4.757 1zx4A 192 4.874 2ganA 190 5.242 d.108.1.1 134889 2opwA 291 6.394 2zbwA 335 6.631 1y71A 130 7.431 b.34.16.1 122677 4crxA 322 7.758 a.60.9.1,d.163.1.1 18095,42155 2bswA 146 8.471 d.108.1.1 129127 1f44A 324 8.533 a.60.9.1,d.163.1.1 64982,64983 2gysA 419 8.692 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1jayA 212 8.946 c.2.1.6 66478 1y9kA 157 8.948 d.108.1.1 122779 1dkzA 219 9.916 a.8.4.1,b.130.1.1 90345,90346 1ne2A 200 11.03 c.66.1.32 85586 2f1kA 279 11.31 a.100.1.12,c.2.1.6 132772,132773 1xo0A 324 11.72 a.60.9.1,d.163.1.1 115674,115675 2ahrA 259 11.73 a.100.1.10,c.2.1.6 126775,126776 2pv7A 298 11.83 2jdcA 146 12.36 2v82A 212 12.94 2prbA 196 13.02 2ew2A 316 13.38 1yreA 197 13.49 d.108.1.1 123919 1a0p 290 14.43 1xgyL 216 14.57 2p4qA 497 14.76 1a3qA 285 14.81 b.1.18.1,b.2.5.3 21932,22447 1q9rA 219 15.01 b.1.1.1,b.1.1.2 96305,96306 2culA 232 15.13 c.3.1.7 130813 2q0lA 311 15.56 2jgoA 31 17.73 1zanL 214 17.76 2r7hA 177 18.73 1mjuL 219 19.75 b.1.1.1,b.1.1.2 91304,91305 1pbe 394 20.03 2r1iA 172 20.61 3b2nA 133 21.15 1fl2A 310 22.04 c.3.1.5,c.3.1.5 59869,59870 1bo4A 168 22.43 d.108.1.1 40798 1n0xL 215 22.74 b.1.1.1,b.1.1.2 91532,91533 2a38A 194 23.08 1s7kA 182 23.46 d.108.1.1 118878 1f42A 306 25.61 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2a4dA 160 25.96 d.20.1.1 126152 2j8hA 197 26.33 1lvfA 110 26.40 a.47.2.1 74280 1r9hA 135 26.47 d.26.1.1 97260 1y9bA 90 27.11 a.43.1.9 122777 2fctA 313 27.64 b.82.2.9 133282 1n26A 325 29.08 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2rdqA 288 29.30 2ajuL 216 30.05 1b5qA 472 30.71 c.3.1.2,d.16.1.5 30404,37968 1h7cA 108 31.83 a.7.5.1 70914 1mp8A 281 32.09 d.144.1.7 91384 2iepA 192 33.66 1cosA 31 34.49 k.4.1.1 46405 1e6oL 212 34.54 b.1.1.1,b.1.1.2 20494,21452 2zdiC 151 35.42 2ih3B 212 36.68 1tetL 216 37.04 b.1.1.1,b.1.1.2 19902,20996 2ewcA 126 37.93 d.79.1.1 132454 1sglA 209 38.33 d.124.1.1 105536 2bi7A 384 38.63 1ztxL 212 38.79 2pgdA 482 39.34 a.100.1.1,c.2.1.6 18778,30190 1rurL 217 40.33 b.1.1.1,b.1.1.2 97881,97882 1x9lA 149 40.96 b.2.10.1 109528 2pgd 482 41.01 1forL 210 41.87 b.1.1.1,b.1.1.2 19988,21044 3d9aL 213 42.68 1ledA 243 43.17 b.29.1.1 24039 1ngzA 213 44.49 b.1.1.1,b.1.1.2 80500,80501 1wg8A 285 45.93 a.60.13.1,c.66.1.23 114605,114606 1c5cL 214 45.97 b.1.1.1,b.1.1.2 20474,21438 1pud 386 46.19 1r5yA 386 46.51 c.1.20.1 97134 1vpdA 299 47.29 a.100.1.1,c.2.1.6 113951,113952 1yqgA 263 47.59 1bkrA 109 48.26 a.40.1.1 17394 2yvsA 219 48.30 1itbB 315 48.46 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2b7aA 293 49.17 2ba2A 85 52.04 h.1.30.1 128233 1xwwA 157 52.75 1k0iA 394 52.78 c.3.1.2,d.16.1.2 67942,67943 1fxkC 133 54.68 a.2.5.1 15702 1mun 225 54.97 1iqqA 200 55.20 d.124.1.1 66274 2oszA 93 55.31 15c8L 213 55.56 b.1.1.1,b.1.1.2 20300,21292 1ncwL 219 55.84 b.1.1.1,b.1.1.2 85557,85558 1ugnA 198 56.64 b.1.1.4,b.1.1.4 107828,107829 1ae9A 179 57.38 d.163.1.1 42153 1d4aA 273 57.69 c.23.5.3 31219 2aabL 218 57.70 1mexL 213 57.71 b.1.1.1,b.1.1.2 91259,91260 1cs6A 382 59.24 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1g63A 181 60.93 c.34.1.1 60299 1vcbC 160 61.23 b.3.3.1 22535 2h5nA 133 61.50 2fbjL 213 62.05 b.1.1.1,b.1.1.2 19850,20954 1hr6B 443 63.37 d.185.1.1,d.185.1.1 61166,61167 1rypG 244 64.13 d.153.1.4 41938 1u00A 227 65.45 a.8.4.1,b.130.1.1 112900,112901 1pxgA 382 66.65 c.1.20.1 95287 2bkdN 134 66.71 1twfK 120 66.87 d.74.3.2 112736 1nekA 588 68.36 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 3d0kA 304 69.20 1m4iA 181 69.21 d.108.1.1 74457 1wq3A 322 70.08 1jjfA 268 70.28 c.69.1.2 66765 1zoyA 622 72.84 1ykjA 394 73.95 1y56B 382 75.40 1hfcA 169 75.55 d.92.1.11 40335 1w4xA 542 75.83 c.3.1.5,c.3.1.5 109171,109172 1b35B 255 76.62 b.121.4.1 23334 3baeL 218 76.88 1kb9A 431 77.67 d.185.1.1,d.185.1.1 77311,77312 1l1dA 152 77.95 b.88.1.3 73452 2ap3A 199 79.96 a.24.27.1 127110 2gjdA 157 80.27 1j7dA 145 80.64 d.20.1.1 62680 1z2uA 150 83.09 d.20.1.1 124389 2ivnA 330 83.90 1gk8A 475 84.18 c.1.14.1,d.58.9.1 65234,65235 1um5L 219 84.57 b.1.1.1,b.1.1.2 113304,113305 1rypF 233 85.18 d.153.1.4 41937 2fjbA 643 85.31 1lm8V 160 86.19 b.3.3.1 74035 1bkf 107 86.54 2r15A 212 87.23 2adgA 214 88.19 1np3A 338 88.61 a.100.1.2,c.2.1.6 85946,85947 2nt2A 145 89.31 1trbA 320 89.62 c.3.1.5,c.3.1.5 30529,30530