# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1b4fA 82 0.9518 a.60.1.2 17934 2ozgA 396 1.446 1ydiA 263 2.266 2a4nA 182 2.803 d.108.1.1 126159 1u6mA 199 3.026 d.108.1.1 113069 2pc1A 201 3.178 1cs6A 382 3.718 b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1v38A 78 3.878 a.60.1.2 100280 2i00A 406 3.908 2hv2A 400 3.918 1yghA 164 4.005 d.108.1.1 40802 1f44A 324 4.436 a.60.9.1,d.163.1.1 64982,64983 1cjwA 166 4.468 d.108.1.1 40818 2reeA 224 4.643 2cntA 160 4.830 3c26A 266 4.904 1l0cA 207 5.069 d.108.1.1 73393 1b0xA 94 5.169 a.60.1.2 17933 1txgA 335 5.234 a.100.1.6,c.2.1.6 112775,112776 2dxqA 150 5.412 2fiaA 162 5.420 d.108.1.1 133514 2j8mA 172 5.520 2a4dA 160 5.619 d.20.1.1 126152 2qecA 204 5.862 1cfb 205 7.242 1kuxA 207 7.393 d.108.1.1 73021 2f1kA 279 8.497 a.100.1.12,c.2.1.6 132772,132773 2i6cA 160 8.550 d.108.1.1 137095 1jatB 138 8.807 d.20.1.1 62819 2pjkA 178 9.072 4crxA 322 9.373 a.60.9.1,d.163.1.1 18095,42155 1bg6 359 11.53 1xo0A 324 11.80 a.60.9.1,d.163.1.1 115674,115675 1z82A 335 11.81 2o28A 184 13.12 1yk3A 210 13.82 d.108.1.1 123493 1z4rA 168 13.89 d.108.1.1 124444 1ne2A 200 14.04 c.66.1.32 85586 2ahrA 259 14.68 a.100.1.10,c.2.1.6 126775,126776 1ylmA 144 14.74 1evyA 366 17.43 a.100.1.6,c.2.1.6 18811,30215 1qstA 160 18.20 d.108.1.1 40804 1s3zA 165 18.68 d.108.1.1 105250 3blnA 143 18.71 1yvoA 172 18.73 d.108.1.1 124106 1a0p 290 19.45 1i1dA 161 19.59 d.108.1.1 61526 2fiwA 172 19.81 d.108.1.1 133539 3cumA 302 19.90 1ks9A 291 20.09 a.100.1.7,c.2.1.6 68857,68858 1i12A 160 20.63 d.108.1.1 61515 2f06A 144 21.87 d.58.18.11,d.58.18.11 132652,132653 1jeyA 609 22.40 b.131.1.1,c.62.1.3 90370,90371 1t5eA 360 23.40 f.46.1.1 106436 1aihA 170 26.13 d.163.1.1 42149 3c3dA 311 26.23 1d4aA 273 26.65 c.23.5.3 31219 1wwzA 159 27.11 d.108.1.1 121380 1jayA 212 27.14 c.2.1.6 66478 2trcP 217 27.60 c.47.1.6 33051 2zblA 421 27.76 1mk4A 157 28.21 d.108.1.1 84979 2ae6A 166 28.23 d.108.1.1 126600 2ojqA 348 28.35 1oacA 727 28.51 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1w8xP 117 28.62 i.6.1.1 114392 1r9hA 135 29.57 d.26.1.1 97260 1ihcA 188 30.25 c.57.1.1 62379 1ae9A 179 31.15 d.163.1.1 42153 2cy2A 174 32.28 d.108.1.1 131016 2p2wA 367 33.84 2v82A 212 34.13 2in1A 175 35.32 d.20.1.4 137521 2bswA 146 37.48 d.108.1.1 129127 2pv7A 298 38.18 2z6oA 172 38.70 1lvfA 110 40.22 a.47.2.1 74280 2bh1A 250 40.80 c.55.1.11,c.55.1.11 128506,128507 1vhsA 175 41.19 d.108.1.1 100698 2ob0A 170 41.96 2vdeA 460 42.38 1yf5L 254 43.77 c.55.1.11,c.55.1.11 123049,123050 2zbwA 335 44.57 1gheA 177 45.27 d.108.1.1 76222 1bkf 107 46.91 1yr0A 175 47.83 d.108.1.1 123905 2oh1A 179 48.77 2fctA 313 49.26 b.82.2.9 133282 2i51A 195 49.60 1kmiZ 214 49.83 h.4.11.1 72752 1ukxA 137 49.92 d.20.1.3 107919 2ft0A 235 50.14 1y71A 130 50.97 b.34.16.1 122677 2osoA 163 51.17 1csh 435 52.00 2i6hA 207 52.87 2gqqA 163 54.24 2giyA 191 55.28 b.1.1.1 135254 1u4qA 322 55.47 a.7.1.1,a.7.1.1,a.7.1.1 113024,113025,113026 2pajA 492 55.92 1iarB 207 56.48 b.1.2.1,b.1.2.1 22037,22038 1j7dA 145 58.24 d.20.1.1 62680 2pbcA 102 60.09 2ew2A 316 61.84 1yreA 197 62.78 d.108.1.1 123919 2q0yA 153 64.61 1a3qA 285 65.18 b.1.18.1,b.2.5.3 21932,22447 2g2cA 167 65.24 c.57.1.1 134535 1u5pA 216 65.40 a.7.1.1,a.7.1.1 113046,113047 1fx3A 169 66.39 d.33.1.1 38524 1jeoA 180 67.17 c.80.1.3 66611 1o7dC 159 67.42 b.30.5.6 86640 1jeyB 565 67.68 b.131.1.2,c.62.1.4 90372,90373 2ivnA 330 68.85 2csgA 424 69.43 b.82.2.12 130768 2ifcA 385 71.03 1qsmA 152 71.59 d.108.1.1 40808 1quuA 250 71.92 a.7.1.1,a.7.1.1 16320,16321 1q2yA 140 73.31 d.108.1.1 95655 1k4tA 592 74.48 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 2r3iA 298 77.91 1aj8A 371 78.52 a.103.1.1 18900 1nf2A 268 79.28 c.108.1.10 91849 1zoyA 622 79.91 2cz1A 206 80.34 d.149.1.1 131033 2bepA 159 80.57 d.20.1.1 128385 2yvsA 219 81.41 1xebA 150 81.80 d.108.1.1 115219 1xwwA 157 82.18 2aheA 267 82.33 2atrA 138 82.72 d.108.1.1 127305 2g4rA 160 83.96 1ynbA 173 84.74 a.211.1.1 123718 1b87A 181 88.36 d.108.1.1 40797