# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozgA 396 1.539 2dxqA 150 2.440 1ks9A 291 2.663 a.100.1.7,c.2.1.6 68857,68858 1b4fA 82 2.826 a.60.1.2 17934 2pc1A 201 2.892 2fe7A 166 3.102 d.108.1.1 133325 1i1dA 161 3.403 d.108.1.1 61526 2hv2A 400 3.423 2q4vA 170 3.705 d.108.1.1 139878 2o28A 184 3.737 2b5gA 171 3.919 d.108.1.1 127892 2i00A 406 4.215 3c26A 266 4.321 2a4nA 182 4.328 d.108.1.1 126159 2qecA 204 4.495 2q0yA 153 4.681 1yvoA 172 4.818 d.108.1.1 124106 2ae6A 166 4.918 d.108.1.1 126600 1u6mA 199 4.998 d.108.1.1 113069 2reeA 224 5.036 1i12A 160 5.047 d.108.1.1 61515 1bg6 359 5.293 1mk4A 157 5.535 d.108.1.1 84979 1qsmA 152 5.897 d.108.1.1 40808 2oh1A 179 6.408 1qsoA 149 6.466 d.108.1.1 40812 1s3zA 165 6.517 d.108.1.1 105250 1b0xA 94 6.603 a.60.1.2 17933 1z82A 335 6.738 1yghA 164 6.894 d.108.1.1 40802 2cntA 160 7.370 1l0cA 207 7.459 d.108.1.1 73393 2j8mA 172 7.578 2pdoA 144 8.062 1qstA 160 8.931 d.108.1.1 40804 2fiaA 162 9.226 d.108.1.1 133514 1evyA 366 9.518 a.100.1.6,c.2.1.6 18811,30215 2vdeA 460 9.853 1on0A 158 10.36 d.108.1.1 87095 1bo4A 168 10.47 d.108.1.1 40798 1y71A 130 10.72 b.34.16.1 122677 2atrA 138 10.93 d.108.1.1 127305 1cjwA 166 11.16 d.108.1.1 40818 1gheA 177 11.78 d.108.1.1 76222 1v38A 78 11.79 a.60.1.2 100280 1txgA 335 11.89 a.100.1.6,c.2.1.6 112775,112776 2f1kA 279 12.02 a.100.1.12,c.2.1.6 132772,132773 2v82A 212 12.24 1tiqA 180 12.64 d.108.1.1 107010 1np3A 338 12.85 a.100.1.2,c.2.1.6 85946,85947 1xebA 150 13.63 d.108.1.1 115219 3blnA 143 13.86 2cy2A 174 14.32 d.108.1.1 131016 1z4eA 153 14.55 d.108.1.1 124431 1oacA 727 15.34 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1z4rA 168 16.00 d.108.1.1 124444 1kuxA 207 16.42 d.108.1.1 73021 2a4dA 160 16.75 d.20.1.1 126152 3cumA 302 16.79 1vhsA 175 17.24 d.108.1.1 100698 2p4qA 497 17.48 1d4aA 273 17.89 c.23.5.3 31219 2ob0A 170 18.01 1u00A 227 21.23 a.8.4.1,b.130.1.1 112900,112901 1q2yA 140 21.30 d.108.1.1 95655 1dkzA 219 21.42 a.8.4.1,b.130.1.1 90345,90346 2zdiC 151 21.61 2ew2A 316 22.44 2ganA 190 23.04 d.108.1.1 134889 2fiwA 172 24.94 d.108.1.1 133539 2pv7A 298 25.53 1pbe 394 26.71 2i6cA 160 26.72 d.108.1.1 137095 1jayA 212 27.04 c.2.1.6 66478 2ahrA 259 27.17 a.100.1.10,c.2.1.6 126775,126776 1nslA 184 27.48 d.108.1.1 86137 1yk3A 210 27.65 d.108.1.1 123493 2euiA 153 28.32 d.108.1.1 132387 1yr0A 175 29.17 d.108.1.1 123905 2culA 232 29.22 c.3.1.7 130813 2fctA 313 32.02 b.82.2.9 133282 2pajA 492 32.69 2zbwA 335 34.24 1xwwA 157 34.83 1f44A 324 35.73 a.60.9.1,d.163.1.1 64982,64983 1a3qA 285 36.89 b.1.18.1,b.2.5.3 21932,22447 2bswA 146 37.29 d.108.1.1 129127 1b87A 181 40.84 d.108.1.1 40797 2jdcA 146 43.54 2iepA 192 44.03 4crxA 322 47.21 a.60.9.1,d.163.1.1 18095,42155 1mp8A 281 48.24 d.144.1.7 91384 1wwzA 159 49.58 d.108.1.1 121380 2pgdA 482 49.61 a.100.1.1,c.2.1.6 18778,30190 1jatB 138 50.22 d.20.1.1 62819 1kl9A 182 51.11 a.60.14.1,b.40.4.5 111574,111575 1ae9A 179 52.02 d.163.1.1 42153 1lvfA 110 55.68 a.47.2.1 74280 1ne2A 200 56.90 c.66.1.32 85586 1yt8A 539 57.99 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1xo0A 324 58.84 a.60.9.1,d.163.1.1 115674,115675 1a0p 290 59.92 2fl4A 149 60.27 d.108.1.1 133706 2q0lA 311 62.10 2prbA 196 62.19 1zoyA 622 62.93 1ooyA 481 63.32 c.124.1.3,c.124.1.2 93388,93389 1s7kA 182 63.36 d.108.1.1 118878 1ugnA 198 64.11 b.1.1.4,b.1.1.4 107828,107829 1ek9A 428 65.50 f.5.1.1 43809 1wg8A 285 65.89 a.60.13.1,c.66.1.23 114605,114606 2gl5A 410 67.13 c.1.11.2,d.54.1.1 135336,135337 2b7aA 293 67.25 2pgd 482 67.46 1wq3A 322 67.84 2pjkA 178 68.70 1fx3A 169 68.88 d.33.1.1 38524 1itbB 315 73.60 b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1nzjA 298 75.16 c.26.1.1 92377 3b59A 310 75.25 1fl2A 310 75.74 c.3.1.5,c.3.1.5 59869,59870 1w8xP 117 78.36 i.6.1.1 114392 2yvsA 219 78.87 1vpdA 299 79.21 a.100.1.1,c.2.1.6 113951,113952 1k0iA 394 79.41 c.3.1.2,d.16.1.2 67942,67943 1yreA 197 79.70 d.108.1.1 123919 1fxkC 133 80.82 a.2.5.1 15702 1j7dA 145 81.59 d.20.1.1 62680 2a0iA 330 82.46 1vqwA 457 83.58 c.3.1.5,c.3.1.5 114028,114029 1h7cA 108 84.26 a.7.5.1 70914 1qynA 153 84.58 d.33.1.1 96597 3brcA 156 85.15 2zblA 421 86.86 2esnA 310 88.08 a.4.5.37,c.94.1.1 132333,132334 2r7hA 177 89.21