# List of top-scoring protein chains for T0500.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ji4A	144	0.8818	a.25.1.1	77117
1f6rA	123	26.94	d.2.1.2	36606
1hfzA	124	27.25	d.2.1.2	36618
1cosA	29	35.64	k.4.1.1	46405
2damA	67	37.76		
2jgoA	29	40.47		
2anxA	146	42.06		
2i9iA	254	44.14		
1je8A	82	45.23	a.4.6.2	77108
1xffA	240	45.96	d.153.1.1	109580
1hmkA	124	46.22	d.2.1.2	36603
1hfyA	123	46.28	d.2.1.2	36604
2p0uA	413	53.86		
1fvrA	327	56.27	d.144.1.7	60047
1amkA	251	56.57	c.1.1.1	28503
2ljrA	244	57.46	a.45.1.1,c.47.1.5	17709,33003
1aj2A	282	58.47	c.1.21.1	29665
1wz7A	111	59.05	d.330.1.1	121480
1fkvA	124	59.16	d.2.1.2	36602
1fkqA	124	61.52	d.2.1.2	36601
1wy6A	172	61.63	a.118.20.1	121432
1aq5A	47	62.77	h.1.6.1	45577
2nmlA	104	66.98	d.330.1.1	138371
1z1eA	390	70.04		
2an7A	83	72.67		
2d5jA	377	75.51	a.102.1.7	131271
2ahfA	377	77.33		
2cwdA	161	79.56		
2ad6B	69	89.30	a.137.2.1	126569