# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ehyA	294	9.575	c.69.1.11	34693
1cqwA	295	15.72	c.69.1.8	34679
2puhA	286	15.79		
1azwA	313	15.96	c.69.1.7	34658
1iz7A	295	17.17	c.69.1.8	76982
2pujA	286	17.88		
1mtzA	293	18.07	c.69.1.7	79467
2rhwA	283	18.18		
1kmiZ	214	19.75	h.4.11.1	72752
2yysA	286	19.92		
1xqwA	293	21.51		
2a8mA	420	22.95		
1a8qA	274	24.30	c.69.1.12	34702
1a8sA	273	24.55	c.69.1.12	34710
1f74A	293	24.97	c.1.10.1	29079
2cr9A	139	25.14	d.297.1.1	130735
1brt	277	26.16		
1c4xA	285	27.02	c.69.1.10	34684
1bn6A	294	27.10	c.69.1.8	34678
1zoiA	276	27.94		
1u2eA	289	28.62		
1bn7A	294	29.03	c.69.1.8	34677
2a8jA	420	30.13		
1y71A	130	30.34	b.34.16.1	122677
1qtrA	317	33.13	c.69.1.7	34660
1brtA	277	34.73	c.69.1.12	34699
1imjA	210	35.91	c.69.1.23	71246
1wy6A	172	36.88	a.118.20.1	121432
2og1A	286	40.88		
1tqhA	247	41.04	c.69.1.29	107225
2a8lA	420	41.37		
2gs8A	317	41.42		
1dhpA	292	44.65	c.1.10.1	29097
1cr6B	554	45.54	c.69.1.11,c.108.1.2	34688,43338
1k2xA	177	46.74	d.153.1.5	90929
1cv2A	296	48.75	c.69.1.8	34680
1broA	277	49.11	c.69.1.12	34700
3b5nC	70	57.27		
1kb9G	125	61.59	f.27.1.1	77322
1a8uA	277	63.06	c.69.1.12	34703
2o2iA	300	63.71		
1va4A	279	64.30	c.69.1.12	108458
1womA	271	64.60		
1uk8A	282	65.37	c.69.1.10	107907
1mj5A	302	68.64	c.69.1.8	91285
3cz6A	168	69.77		
1unqA	125	70.08	b.55.1.1	107968
1nal1	297	70.84		
1o5kA	306	74.97	c.1.10.1	92504
1f06A	320	75.59	c.2.1.3,d.81.1.3	59556,59557
2ewhA	98	76.88	d.58.56.1	132466
2qg3A	208	78.74		
2dlwA	113	78.75		
2eqoA	140	79.43		
2qmqA	286	80.59		
2daqA	110	81.70	b.34.9.2	131354
1qcrF	103	84.89	f.27.1.1	43676
2oyoA	196	86.97