# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ehyA	294	6.312	c.69.1.11	34693
1xqwA	293	10.31		
1azwA	313	11.52	c.69.1.7	34658
1iz7A	295	11.93	c.69.1.8	76982
2puhA	286	12.91		
2pujA	286	12.97		
1kmiZ	214	13.81	h.4.11.1	72752
2a8mA	420	14.37		
2rhwA	283	14.77		
2yysA	286	16.05		
1imjA	210	16.37	c.69.1.23	71246
1wy6A	172	16.52	a.118.20.1	121432
1qtrA	317	16.69	c.69.1.7	34660
1u2eA	289	16.87		
1zoiA	276	18.34		
1u32A	293	18.59	d.159.1.3	107631
2a8jA	420	18.75		
1a8sA	273	19.23	c.69.1.12	34710
1bn6A	294	19.84	c.69.1.8	34678
3b5nC	70	20.27		
2daqA	110	21.87	b.34.9.2	131354
1wm1A	317	24.69	c.69.1.7	109405
1a8qA	274	25.15	c.69.1.12	34702
1cqwA	295	26.94	c.69.1.8	34679
1brt	277	27.52		
2a8lA	420	27.85		
1c4xA	285	28.32	c.69.1.10	34684
1brtA	277	30.14	c.69.1.12	34699
1j33A	335	32.35	c.39.1.1	77069
2qg3A	208	32.86		
1mtzA	293	34.47	c.69.1.7	79467
1wx1A	335	35.87		
1cosA	31	37.43	k.4.1.1	46405
1uk8A	282	40.68	c.69.1.10	107907
1cv2A	296	42.90	c.69.1.8	34680
2dlwA	113	46.32		
1bn7A	294	52.93	c.69.1.8	34677
1va4A	279	53.39	c.69.1.12	108458
1broA	277	55.34	c.69.1.12	34700
1mj5A	302	55.61	c.69.1.8	91285
1vffA	423	58.40	c.1.8.4	120033
1s95A	333	59.42	d.159.1.3	105375
2yzvA	303	60.56		
1a8uA	277	62.42	c.69.1.12	34703
1k2xA	177	62.53	d.153.1.5	90929
1y71A	130	64.39	b.34.16.1	122677
1cr6B	554	64.93	c.69.1.11,c.108.1.2	34688,43338
2og1A	286	65.05		
2yvwA	425	66.83		
2c41A	158	68.58		
1tqhA	247	71.44	c.69.1.29	107225
1womA	271	72.24		
2q00A	129	72.54		
1hf8A	289	73.17	a.7.8.2,a.118.9.3	90354,90355
1dhpA	292	74.84	c.1.10.1	29097
1tcoA	375	77.44	d.159.1.3	42084
1qcrF	103	84.69	f.27.1.1	43676
2qmqA	286	86.08		
2jgoA	31	88.97