# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qg3A	208	4.593		
1ppjF	110	15.20	f.27.1.1	104262
1kmiZ	214	17.83	h.4.11.1	72752
3cz6A	168	20.28		
1zymA	258	21.62	a.60.10.1,c.8.1.2	18110,30705
1azwA	313	23.05	c.69.1.7	34658
1qtrA	317	31.16	c.69.1.7	34660
1xqwA	293	31.59		
1y71A	130	31.75	b.34.16.1	122677
1iz7A	295	32.69	c.69.1.8	76982
2dvkA	188	33.89		
2yysA	286	40.16		
1wy6A	172	42.89	a.118.20.1	121432
1ehyA	294	43.52	c.69.1.11	34693
2daqA	110	45.80	b.34.9.2	131354
2a8lA	420	46.62		
2q00A	129	48.11		
1fvrA	327	48.77	d.144.1.7	60047
2a8jA	420	50.86		
1kb9G	125	50.96	f.27.1.1	77322
1wm1A	317	51.32	c.69.1.7	109405
2pujA	286	52.78		
2a8mA	420	53.23		
1dlcA	584	57.88	b.18.1.3,b.77.2.1,f.1.3.1	23719,27976,43391
2ehwA	120	59.19		
1a8sA	273	61.94	c.69.1.12	34710
1n3gA	113	63.40	d.204.1.1	79962
2rhwA	283	64.25		
2puhA	286	64.69		
1imjA	210	69.49	c.69.1.23	71246
1cv2A	296	70.71	c.69.1.8	34680
2z2iA	191	71.14		
2vqeB	256	74.17		
1pxgA	382	74.45	c.1.20.1	95287
1mj5A	302	79.09	c.69.1.8	91285
1brtA	277	79.44	c.69.1.12	34699
1k2xA	177	79.45	d.153.1.5	90929
2uubB	256	79.56	c.23.15.1	139932
1b5eA	246	81.38	d.117.1.1	41056
1hn9A	317	81.60	c.95.1.2,c.95.1.2	35977,35978
1imuA	107	81.62	d.204.1.1	66218
1l4sA	112	81.97	d.204.1.1	77693
1zoiA	276	84.52		
1bn6A	294	86.70	c.69.1.8	34678
2o2iA	300	89.48		
2pthA	193	89.90	c.56.3.1	33793