# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ehyA	294	6.963	c.69.1.11	34693
2puhA	286	13.85		
2pujA	286	14.43		
1kmiZ	214	15.43	h.4.11.1	72752
2rhwA	283	16.38		
2a8mA	420	16.70		
1imjA	210	16.79	c.69.1.23	71246
1u2eA	289	18.89		
1iz7A	295	19.21	c.69.1.8	76982
1cqwA	295	19.43	c.69.1.8	34679
1azwA	313	20.30	c.69.1.7	34658
2yysA	286	21.09		
1bn6A	294	22.09	c.69.1.8	34678
2a8jA	420	24.44		
1zoiA	276	24.90		
1a8qA	274	26.39	c.69.1.12	34702
1brt	277	26.47		
2a8lA	420	27.34		
1a8sA	273	27.71	c.69.1.12	34710
1wy6A	172	30.59	a.118.20.1	121432
1qtrA	317	31.17	c.69.1.7	34660
1c4xA	285	31.52	c.69.1.10	34684
1xqwA	293	32.58		
1cr6B	554	35.93	c.69.1.11,c.108.1.2	34688,43338
1bn7A	294	37.08	c.69.1.8	34677
2daqA	110	39.22	b.34.9.2	131354
1tqhA	247	41.54	c.69.1.29	107225
1broA	277	43.02	c.69.1.12	34700
3b5nC	70	44.34		
1brtA	277	45.22	c.69.1.12	34699
2og1A	286	48.47		
2cr9A	139	48.58	d.297.1.1	130735
1y71A	130	50.12	b.34.16.1	122677
2qg3A	208	52.41		
1a8uA	277	60.77	c.69.1.12	34703
1uk8A	282	62.60	c.69.1.10	107907
1cv2A	296	63.00	c.69.1.8	34680
1u32A	293	68.81	d.159.1.3	107631
1va4A	279	72.60	c.69.1.12	108458
1womA	271	75.91		
1k2xA	177	77.36	d.153.1.5	90929
1wm1A	317	79.77	c.69.1.7	109405
2dlwA	113	84.49		
1dhpA	292	84.79	c.1.10.1	29097
1kb9G	125	85.14	f.27.1.1	77322