# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kmiZ 214 0.6046 h.4.11.1 72752 2qg3A 208 2.536 1fvrA 327 3.123 d.144.1.7 60047 1kb9G 125 3.881 f.27.1.1 77322 1y71A 130 4.530 b.34.16.1 122677 2daqA 110 9.99 b.34.9.2 131354 1jwhA 337 10.41 d.144.1.7 71913 1wy6A 172 10.71 a.118.20.1 121432 3cz6A 168 11.54 2qneA 495 13.06 1ppjF 110 14.97 f.27.1.1 104262 1shcA 195 15.40 b.55.1.2 26992 1yioA 208 15.65 a.4.6.2,c.23.1.1 123326,123327 1unqA 125 15.83 b.55.1.1 107968 1qcrF 103 16.14 f.27.1.1 43676 1dlcA 584 16.73 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1azwA 313 17.44 c.69.1.7 34658 1l4sA 112 17.55 d.204.1.1 77693 1zymA 258 18.97 a.60.10.1,c.8.1.2 18110,30705 1whvA 100 20.30 d.58.7.1 114652 1h7cA 108 23.71 a.7.5.1 70914 1r0pA 312 24.69 d.144.1.7 96734 1kyoG 126 28.64 f.27.1.1 73259 1iz7A 295 29.38 c.69.1.8 76982 1d02A 202 29.72 c.52.1.8 33313 1qtrA 317 30.86 c.69.1.7 34660 1opjA 293 31.30 d.144.1.7 87230 2dvkA 188 32.11 1lt4A 247 33.44 d.166.1.1 42231 2g45A 129 34.41 1t4oA 117 34.52 d.50.1.1 106425 1wz7A 111 36.60 d.330.1.1 121480 2reiA 318 37.76 1czjA 111 38.64 a.138.1.1 19663 1imuA 107 39.31 d.204.1.1 66218 1xqwA 293 39.44 1j1bA 420 41.13 d.144.1.7 90758 2c30A 321 42.27 2yysA 286 43.24 1p4oA 322 44.00 d.144.1.7 87775 2hq2A 354 44.47 e.62.1.1 136656 1tu9A 134 46.03 a.1.1.2 107320 1wiiA 85 46.57 g.41.3.4 114673 1wm1A 317 47.12 c.69.1.7 109405 2bm0A 691 48.06 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2bfxA 284 49.22 2bkyA 97 49.62 d.68.6.1 128715 2zejA 184 51.92 3bosA 242 52.06 1l5pA 93 52.34 d.15.4.1 73598 2z2iA 191 52.67 1n3gA 113 53.94 d.204.1.1 79962 1vdlA 80 56.06 a.5.2.1 108528 1hwxA 501 58.00 c.2.1.7,c.58.1.1 30250,33898 2griA 112 59.06 2cstA 411 59.81 c.67.1.1 34273 1ekgA 127 62.32 d.82.2.1 40021 2nmlA 104 64.75 d.330.1.1 138371 1mp8A 281 64.86 d.144.1.7 91384 2f57A 317 65.34 1ji6A 589 65.98 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1voqa 90 67.62 2crbA 97 68.31 a.7.16.1 130737 1wgoA 123 69.24 b.1.3.1 114618 1aep 161 71.98 1aepA 161 71.98 a.63.1.1 18139 1bn6A 294 73.91 c.69.1.8 34678 1sg7A 96 74.77 a.239.1.1 118961 1bcfA 158 75.13 a.25.1.1 16648 1a1z 91 77.01 1jqhA 308 80.71 d.144.1.7 71793 1uu3A 310 82.22 d.144.1.7 99999 3cblA 377 83.77 1a8qA 274 83.98 c.69.1.12 34702 2r5xA 129 84.33 1q41A 424 86.08 d.144.1.7 95774 1lhpA 312 87.75 c.72.1.5 77960