# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s95A	333	6.013	d.159.1.3	105375
1i2oA	316	12.89	c.1.10.1	61574
1onrA	316	13.72	c.1.10.1	29169
2q7sA	290	14.54		
1auiA	521	15.54	d.159.1.3	42085
1s1hD	179	19.30	i.1.1.1	105157
2b3hA	329	21.93		
2inpC	328	27.64		
1lm4A	194	29.63	d.167.1.1	84626
1bcoA	327	30.63	b.48.1.1,c.55.3.3	26431,33676
1vd3A	217	32.13		
1qd9A	124	32.30	d.79.1.1	39758
1tcoA	375	33.33	d.159.1.3	42084
1q3kA	259	34.23	c.125.1.1	95693
1ox3A	109	35.36	h.1.17.1	93668
2inwA	133	36.08	d.110.8.1	137533
1xwwA	157	39.34		
1dx0A	219	41.69	d.6.1.1	37324
1t0qB	330	42.45	a.25.1.2	106221
2iblA	130	43.80		
2incB	322	45.11	a.25.1.2	137525
2g39A	497	46.09	c.124.1.2,c.124.1.2	134553,134554
1v7zA	260	46.19	c.125.1.1	100488
2p8uA	478	46.67		
1bco	327	47.61		
1fjgB	256	47.80	c.23.15.1	31400
1b72A	97	49.45	a.4.1.1	16000
2e67A	264	49.52		
2uykA	129	51.77		
1kx5D	125	53.24	a.22.1.1	77596
2c7nA	74	55.69	g.39.1.15	130069
1vcbC	160	61.51	b.3.3.1	22535
1d1qA	161	62.31	c.44.1.1	32642
1qahA	136	64.04	d.79.1.1	96338
1bqbA	301	64.99	d.92.1.2	58962
2g5cA	281	65.78	a.100.1.12,c.2.1.6	134646,134647
2b33A	140	66.72	d.79.1.1	127765
1cbyA	259	69.24	d.103.1.1	40705
1i4mA	108	70.42	d.6.1.1	66025
1lt4A	247	70.73	d.166.1.1	42231
1qu9A	128	71.08	d.79.1.1	39755
2pgi	445	71.59		
1cz1A	394	72.06	c.1.8.3	28839
1d0cA	444	72.43	d.174.1.1	64769
1b0zA	445	72.49	c.80.1.2	35309
2ox6A	166	74.84		
1x7yA	400	75.72	c.36.1.11	114944
1bccE	196	76.13	b.33.1.1,f.23.12.1	24431,43699
1yzsA	121	76.23		
2jbhA	225	76.89		
1mtyB	384	77.64	a.25.1.2	16740
1rzhM	307	78.57	f.26.1.1	98165
2i9iA	254	78.69		
1jliA	112	80.01	a.26.1.2	16884
1vqoH	171	80.64	d.41.4.1	120369
3cx5H	93	82.63		
2dkyA	91	82.91		
3bexA	249	83.65		
1mmoB	384	84.49	a.25.1.2	16768
1oniA	137	86.87	d.79.1.1	87144
2e1dA	331	87.48		
1qwzA	235	87.62	b.100.1.1	96510
2gtdA	251	88.52	c.55.1.13,c.55.1.13	135634,135635