# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1scfA	273	19.01	a.26.1.2	16873
1o7qA	289	20.33	c.68.1.9	92626
1wkuA	254	32.27		
2ozlA	365	35.04		
1c4xA	285	35.33	c.69.1.10	34684
2qg3A	208	38.37		
2nmlA	104	45.10	d.330.1.1	138371
1x25A	128	46.73	d.79.1.1	121619
1lzjA	292	46.95	c.68.1.9	74352
1je5A	206	52.69	b.40.4.7	62909
1cosA	31	53.50	k.4.1.1	46405
2dvkA	188	54.88		
1azwA	313	60.75	c.69.1.7	34658
2jgoA	31	64.04		
1zuoA	186	67.98	d.20.1.1	125680
1bu8A	452	70.35	b.12.1.2,c.69.1.19	23647,34795
1winA	143	71.85	d.43.2.1	114678
2qjjA	402	74.23		
1mtzA	293	77.48	c.69.1.7	79467
2zf5O	497	80.31		
1dkzA	219	83.31	a.8.4.1,b.130.1.1	90345,90346
1u04A	771	83.93	b.34.14.1,c.55.3.10	107539,107540
1sgoA	139	86.11	d.82.3.1	98857
2pthA	193	86.53	c.56.3.1	33793
1w78A	422	87.32		
1wy6A	172	87.51	a.118.20.1	121432
1fzyA	149	87.72	d.20.1.1	65072
1y71A	130	88.55	b.34.16.1	122677