# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y71A	130	4.186	b.34.16.1	122677
2qg3A	208	5.062		
2dvkA	188	11.10		
2ozlA	365	16.80		
1scfA	273	19.12	a.26.1.2	16873
2oltA	227	30.50		
1pytA	94	30.57	d.58.3.1	39064
2zc2A	78	31.68		
1whnA	128	37.75	d.50.1.1	114648
2ehwA	120	37.95		
1y8xA	160	40.67	d.20.1.1	122769
1fzyA	149	43.77	d.20.1.1	65072
2nmlA	104	47.47	d.330.1.1	138371
1je5A	206	50.57	b.40.4.7	62909
2ek0A	90	51.88		
1x91A	153	53.68	a.29.6.1	114975
2rerA	173	54.62		
1w9hA	427	63.27	c.55.3.10	120785
1xg2B	153	65.07		
1azwA	313	66.67	c.69.1.7	34658
1rypI	222	68.50	d.153.1.4	41877
2yw3A	207	68.60		
2bvcA	486	70.23	d.15.9.1,d.128.1.1	129243,129244
2z2iA	191	72.46		
1dkmA	410	72.47	c.60.1.2	34000
2pthA	193	73.41	c.56.3.1	33793
2pt7A	330	75.43		
1wy7A	207	75.61	c.66.1.32	121433
2pmrA	87	76.16		
1t8kA	77	79.87	a.28.1.1	106666
2rauA	354	86.45		
1z2uA	150	86.87	d.20.1.1	124389
1hyvA	166	87.32	c.55.3.2	61424
1u00A	227	87.88	a.8.4.1,b.130.1.1	112900,112901