# List of top-scoring protein chains for T0500.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ji4A	144	0.1882	a.25.1.1	77117
1f6rA	123	24.35	d.2.1.2	36606
1hfzA	124	25.87	d.2.1.2	36618
1wz7A	111	26.08	d.330.1.1	121480
3boqA	160	36.47		
2nmlA	104	36.60	d.330.1.1	138371
2an7A	83	37.24		
1hbnC	248	37.82	d.58.31.1	60902
1mroC	247	37.83	d.58.31.1	39437
1p1aA	85	39.14	d.15.1.1	104059
1t3wA	148	40.29	a.236.1.1	112233
1g0oA	283	41.31	c.2.1.2	60181
1ybvA	283	41.99	c.2.1.2	29948
2cnrA	82	43.79		
2jgoA	29	48.35		
2grcA	129	51.32		
1hfyA	123	51.68	d.2.1.2	36604
1fkvA	124	52.73	d.2.1.2	36602
1hmkA	124	52.96	d.2.1.2	36603
1fkqA	124	66.12	d.2.1.2	36601
2damA	67	66.46		
2h60A	128	71.57		
2ogdA	390	75.23		
3dhzA	329	76.69		
1u9cA	224	88.92	c.23.16.2	113234