# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ufoA	238	4.355	c.69.1.27	99344
2hdwA	367	21.90		
1qs0A	407	23.81	c.36.1.11	31829
1r3dA	264	32.61	c.69.1.35	111680
2og1A	286	33.76		
1ede	310	36.04		
1b6g	310	38.10		
1a8qA	274	39.69	c.69.1.12	34702
2qg3A	208	42.85		
1gpl	432	42.98		
2yysA	286	44.21		
1cvl	319	45.83		
1zoiA	276	46.02		
1tvjA	166	47.79		
2rauA	354	48.84		
1x0lA	333	53.78		
1qtrA	317	55.96	c.69.1.7	34660
2ciwA	299	56.51	a.39.3.1,a.39.3.1	130502,130503
2f4dA	184	56.69		
1lt3A	240	56.87	d.166.1.1	42230
1a88A	275	61.49	c.69.1.12	34707
1iojA	57	61.57	j.39.1.1	46293
1wm1A	317	68.23	c.69.1.7	109405
2jgoA	31	72.96		
2e0cA	409	74.14		
2yvyA	278	75.92		
1zclA	180	76.16		
1ehyA	294	79.33	c.69.1.11	34693
1azwA	313	79.43	c.69.1.7	34658
1bn7A	294	80.82	c.69.1.8	34677
1xqwA	293	81.41		
1sqhA	312	82.72	d.108.1.5	98966
2vobA	652	83.41		
1q0rA	298	83.78	c.69.1.28	95508
1jeyA	609	85.19	b.131.1.1,c.62.1.3	90370,90371
1jd1A	129	85.60	d.79.1.1	62890
2e3dA	302	87.99		
2e3jA	356	88.08		
1u2eA	289	89.34