# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ufoA	238	4.797	c.69.1.27	99344
1r3dA	264	25.81	c.69.1.35	111680
2hdwA	367	26.84		
1b6g	310	30.02		
2ciwA	299	30.78	a.39.3.1,a.39.3.1	130502,130503
1ede	310	32.70		
2f4dA	184	32.99		
1tvjA	166	34.13		
1jd1A	129	43.51	d.79.1.1	62890
1x0lA	333	45.41		
2al2A	436	46.60	c.1.11.1,d.54.1.1	126953,126954
2og1A	286	46.97		
1a8qA	274	48.64	c.69.1.12	34702
1gpl	432	49.70		
2onuA	152	51.23		
1f52A	468	51.41	d.15.9.1,d.128.1.1	37839,41169
1cvl	319	54.48		
1lt3A	240	55.00	d.166.1.1	42230
2qg3A	208	56.61		
1j34C	46	58.94	g.32.1.1	84050
1qd9A	124	59.01	d.79.1.1	39758
1zoiA	276	59.86		
2jgoA	31	63.41		
2bvcA	486	63.92	d.15.9.1,d.128.1.1	129243,129244
1qu9A	128	64.26	d.79.1.1	39755
1zuoA	186	67.08	d.20.1.1	125680
2yysA	286	68.69		
1a88A	275	72.05	c.69.1.12	34707
1xklA	273	75.00	c.69.1.20	115410
1ehyA	294	75.65	c.69.1.11	34693
1qlwA	328	77.40	c.69.1.15	34722
2rauA	354	77.42		
1wm1A	317	77.68	c.69.1.7	109405
1azwA	313	79.84	c.69.1.7	34658
1qtrA	317	81.26	c.69.1.7	34660
1qj4A	257	83.36	c.69.1.20	34796
1cnzA	363	85.22	c.77.1.1	35061
2pl5A	366	85.67		
2qn6B	93	87.23