# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ufoA	238	6.779	c.69.1.27	99344
2qg3A	208	32.62		
2onuA	152	39.54		
2hdwA	367	41.30		
2f4dA	184	51.12		
2ciwA	299	52.54	a.39.3.1,a.39.3.1	130502,130503
2og1A	286	54.89		
1xu9A	286	60.80	c.2.1.2	116052
2ewcA	126	61.13	d.79.1.1	132454
1a8qA	274	66.53	c.69.1.12	34702
1zoiA	276	79.18		
1r3dA	264	81.82	c.69.1.35	111680
1jd1A	129	85.60	d.79.1.1	62890
2yysA	286	87.98		
1cvl	319	88.41