# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ufoA	238	7.268	c.69.1.27	99344
2hdwA	367	35.40		
2yysA	286	48.11		
2og1A	286	49.97		
1ede	310	58.18		
2f4dA	184	58.54		
2qg3A	208	58.80		
1cvl	319	59.32		
1b6g	310	62.09		
1zoiA	276	71.13		
1a8qA	274	71.81	c.69.1.12	34702
1xqwA	293	72.02		
1tvjA	166	76.96		
1vlcA	366	78.00	c.77.1.1	108743
2jgoA	31	80.57		
2vugA	389	81.91		
2ciwA	299	82.65	a.39.3.1,a.39.3.1	130502,130503
2nmlA	104	82.75	d.330.1.1	138371
1sqhA	312	83.55	d.108.1.5	98966
1evyA	366	85.67	a.100.1.6,c.2.1.6	18811,30215
1f52A	468	86.97	d.15.9.1,d.128.1.1	37839,41169
1qtrA	317	89.54	c.69.1.7	34660